MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-93
Paralogues Cpi-Mir-17-P1a  Cpi-Mir-17-P1c  Cpi-Mir-17-P1d  Cpi-Mir-17-P2a  Cpi-Mir-17-P2c  Cpi-Mir-17-P4a  Cpi-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cja-Mir-17-P4d  Cmi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Eca-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Laf-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmr-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Pab-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH585351: 77950-78010 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)		 Mir-17-P4d JH585351: 77950-78010 [-] UCSC Ensembl
Mir-17-P1d JH585351: 78141-78202 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUGUCCCCCCAGCCAGUCCCAGAGGCUCCAAAGUGCUGUUCGUGCAGGUAGCGUGUGCAGCCGACUACUGCCGAGUCAGCGCUUCGCGAGCCCCCCGGACACCCCGUCGGGGGGACCCC
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Structure
        10          20        30         40         50          
UCCUGUCCCCCCAGCCA--    CAGA     CA-        -|   U    G   CGUGUG 
                   GUCC    GGCUC   AAGUGCUG UUCG GCAG UAG      \
                   CAGG    CCGAG   UUCGCGAC GAGC CGUC AUC      C
CCCCAGGGGGGCUGCCCCA    CCCC     CGC        U^   -    -   AGCCGA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-17-P4d_5p
mirBase accessionMIMAT0037705
Sequence 
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Star sequence

Cpi-Mir-17-P4d_3p*
mirBase accessionMIMAT0037706
Sequence 
38- ACUGCCGAGUCAGCGCUUCGCGA -61
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