MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-93
Paralogues Mdo-Mir-17-P1a  Mdo-Mir-17-P1c  Mdo-Mir-17-P2a  Mdo-Mir-17-P2c  Mdo-Mir-17-P4a  Mdo-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Lch-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mml-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 257689998-257690059 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4d)
Mir-17-P4d 2: 257689998-257690059 [+] UCSC Ensembl
Mir-92-P2d 2: 257690293-257690352 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCUGGGCCUUAUCAGUCUUGGGGGGCUCCAAAGUGCUGUUCGUGCAGGUAGUGUGAUAACCUGACCUACUGCUGAGCUAGCACUUCCAGAGCCCCUGGGACACUAUAUCCCUGGAAUUCC
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Structure
        10           20        30          40        50        60
AUUCUGGGCCUUAUCAG---   UG G      CA-       -|    U    G   UGUGAU 
                    UCU  G GGGCUC   AAGUGCU GUUCG GCAG UAG      A
                    AGG  C CCCGAG   UUCACGA CGAGU CGUC AUC      A
CCUUAAGGUCCCUAUAUCAC   GU -      ACC       U^    -    -   CAGUCC 
120       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-17-P4d_5p

mirBase accessionMIMAT0004178
Sequence
0- CAAAGUGCUGUUCGUGCAGGUAG -23
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Proposed targets TargetScanVert: mdo-miR-93-5p
Star sequence

Mdo-Mir-17-P4d_3p*

mirBase accessionMIMAT0026715
Sequence
39- ACUGCUGAGCUAGCACUUCCAGA -62
Get sequence
Proposed targets TargetScanVert: mdo-miR-93-3p