MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-17-P4d

Family name MIR-17 (all species)
Seed AAAGUGC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-17-P1a  Lch-Mir-17-P1c  Lch-Mir-17-P1d  Lch-Mir-17-P2a  Lch-Mir-17-P2c  Lch-Mir-17-P4a  Lch-Mir-17-P4c 
Orthologues Ami-Mir-17-P4d  Bta-Mir-17-P4d  Cfa-Mir-17-P4d  Cmi-Mir-17-P4d  Cpi-Mir-17-P4d  Cpo-Mir-17-P4d  Dno-Mir-17-P4d  Dre-Mir-17-P4d  Ete-Mir-17-P4d  Gmo-Mir-17-P4d  Hsa-Mir-17-P4d  Loc-Mir-17-P4d  Mal-Mir-17-P4d  Mdo-Mir-17-P4d  Mml-Mir-17-P4d  Mmu-Mir-17-P4d  Mun-Mir-17-P4d  Ocu-Mir-17-P4d  Rno-Mir-17-P4d  Sha-Mir-17-P4d  Tni-Mir-17-P4d  Xla-Mir-17-P4d3  Xla-Mir-17-P4d4  Xtr-Mir-17-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH128754.1: 150663-150723 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGGCCUGAAGAUUUCUCUCUGUAGCUCCAAAGUGCUGUUAGUGCAGGUAGUGUGUGUUGGUACCUACUGCAAGACCAGCACUUCCAGAGCUCUCGAGGGUACAGACGCACACGGCAGC
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Structure
        10          20        30         40        50          
AGCUGGCCUGAAGAUUU--     UGU     CA-|       UUAG     G   UGUGUG 
                   CUCUC   AGCUC   AAGUGCUG    UGCAG UAG      \
                   GGGAG   UCGAG   UUCACGAC    ACGUC AUC      U
CGACGGCACACGCAGACAU     CUC     ACC^       CAGA     -   CAUGGU 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Lch-Mir-17-P4d_5p (predicted)

mirBase accessionNone
Sequence
0- CAAAGUGCUGUUAGUGCAGGUAG -23
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Star sequence

Lch-Mir-17-P4d_3p* (predicted)

mirBase accessionNone
Sequence
38- ACUGCAAGACCAGCACUUCCAGA -61
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