Mir-17-P4d4

MirGeneDB ID

Xla-Mir-17-P4d4

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-17-P1a3 Xla-Mir-17-P1a4 Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xla-Mir-17-P4d3

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xtr-Mir-17-P4d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NW_016694811.1: 3964090-3964150 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGUUCCAUCAGACACUGUCCUAUGGGCUCCAAAGUGCUGUUCGUGCAGGUAGAUUUAUAACAUUCCUACUGCAUGGGCAGCACUUCCUGAGCUCAAUGUGACCCUUAACGUCGGACCUAC

Get precursor sequence

Structure

        10         20         30         40        50          
CUGUUCCAUCAGACACU-   C  -       CA-|                G   AUUUAU 
                  GUC UA UGGGCUC   AAGUGCUGUUCGUGCAG UAG      \
                  CAG GU ACUCGAG   UUCACGACGGGUACGUC AUC      A
CAUCCAGGCUGCAAUUCC   U  A       UCC^                -   CUUACA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Em

Mature sequence

Xla-Mir-17-P4d4_5p

mirBase accession

None

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

Get sequence

Star sequence

Xla-Mir-17-P4d4_3p*

mirBase accession

None

Sequence

38- ACUGCAUGGGCAGCACUUCCUGA -61

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