Mir-17-P4d

MirGeneDB ID

Xtr-Mir-17-P4d

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-93a

Paralogues

Xtr-Mir-17-P1a Xtr-Mir-17-P1c Xtr-Mir-17-P2a Xtr-Mir-17-P2c Xtr-Mir-17-P4a Xtr-Mir-17-P4c

Orthologues

Ami-Mir-17-P4d Bta-Mir-17-P4d Cfa-Mir-17-P4d Cja-Mir-17-P4d Cmi-Mir-17-P4d Cpi-Mir-17-P4d Cpo-Mir-17-P4d Dno-Mir-17-P4d Dre-Mir-17-P4d Eca-Mir-17-P4d Ete-Mir-17-P4d Gmo-Mir-17-P4d Hsa-Mir-17-P4d Laf-Mir-17-P4d Lch-Mir-17-P4d Loc-Mir-17-P4d Mal-Mir-17-P4d Mdo-Mir-17-P4d Mml-Mir-17-P4d Mmr-Mir-17-P4d Mmu-Mir-17-P4d Mun-Mir-17-P4d Ocu-Mir-17-P4d Pab-Mir-17-P4d Rno-Mir-17-P4d Sha-Mir-17-P4d Tni-Mir-17-P4d Xla-Mir-17-P4d3 Xla-Mir-17-P4d4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chrUn_NW_016683390v1: 107136-107196 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4d)

Mir-92-P2d chrUn_NW_016683390v1: 107010-107067 [-] UCSC Ensembl
Mir-17-P4d chrUn_NW_016683390v1: 107136-107196 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUCCAUUCCAUCAGAUUGUCCUAUGGGCUUCAAAGUGCUGUUCGUGCAGGUAGCUUAAUAACAGACCUACUGCAUGGGCGGCACUUCCCAAGCCCAUUGUGACCCUACACGUCGGACCCAU

Get precursor sequence

Structure

        10         20         30         40        50          
GUCCAUUCCAUCAGAUU-   CU-        CA-|                G   CUUAAU 
                  GUC   AUGGGCUU   AAGUGCUGUUCGUGCAG UAG      \
                  CAG   UACCCGAA   UUCACGGCGGGUACGUC AUC      A
UACCCAGGCUGCACAUCC   UGU        CCC^                -   CAGACA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-17-P4d_5p

mirBase accession

MIMAT0003659

Sequence

0- CAAAGUGCUGUUCGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: xtr-miR-93a

Star sequence

Xtr-Mir-17-P4d_3p*

mirBase accession

None

Sequence

38- ACUGCAUGGGCGGCACUUCCCAA -61

Get sequence