MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-18a
Paralogues Ocu-Mir-17-P1a  Ocu-Mir-17-P1c  Ocu-Mir-17-P1d  Ocu-Mir-17-P2c  Ocu-Mir-17-P4a  Ocu-Mir-17-P4c  Ocu-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr8: 93067839-93067903 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a)
Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCCUGCUGAUGUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUUUUCAUCCAAUAAUUC
Get precursor sequence
Structure
        10          20        30          40        50        60 
GGGCCUGCUGAUGUUGAGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CUUAAUAACCUACUUUUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-17-P2a_5p

mirBase accessionMIMAT0048111
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Ocu-Mir-17-P2a_3p*

mirBase accessionMIMAT0048112
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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