MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-17-P2a

Family name MIR-17 (all species)
Seed AAGGUGC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1a  Loc-Mir-17-P1c  Loc-Mir-17-P1d  Loc-Mir-17-P2c  Loc-Mir-17-P4a  Loc-Mir-17-P4c  Loc-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Xla-Mir-17-P2a3  Xla-Mir-17-P2a4  Xtr-Mir-17-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG17: 12376145-12376209 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAGUGCUGGCUUGUCCUACUGCUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGGGGCUGUGAUCUGCAUCUGGCAUGA
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Structure
        10        20          30          40        50        60 
GUGAGUGCUGGCUUGUCCUA--  G         --|  U   UC   U    A   UGAAGUA 
                      CU CUUGUGCUA  AGG GCA  UAG GCAG UAG       G
                      GG GAAUACGGU  UCC CGU  AUC CGUC AUC       A
AGUACGGUCUACGUCUAGUGUC  G         CU^  U   GA   C    -   CACGAUU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P2a_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Loc-Mir-17-P2a_3p*

mirBase accessionNone
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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