Mir-17-P2a

MirGeneDB ID

Mml-Mir-17-P2a

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-18a

Paralogues

Mml-Mir-17-P1a Mml-Mir-17-P1c Mml-Mir-17-P1d Mml-Mir-17-P2c Mml-Mir-17-P4a Mml-Mir-17-P4c Mml-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Gmo-Mir-17-P2a2 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mdo-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Tni-Mir-17-P2a2 Xla-Mir-17-P2a3 Xla-Mir-17-P2a4 Xtr-Mir-17-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014352.1: 73152264-73152328 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a)

Mir-17-P1a CM014352.1: 73152126-73152185 [+] UCSC Ensembl
Mir-17-P2a CM014352.1: 73152264-73152328 [+] UCSC Ensembl
Mir-19-P1a CM014352.1: 73152412-73152469 [+] UCSC Ensembl
Mir-17-P4a CM014352.1: 73152580-73152638 [+] UCSC Ensembl
Mir-19-P2a CM014352.1: 73152715-73152775 [+] UCSC Ensembl
Mir-92-P1a CM014352.1: 73152832-73152890 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCCUGCUGCUGUUGAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUAAGAAGUUAUGUAUUCAUCCAAUAAUUC

Get precursor sequence

Structure

        10          20        30          40        50        60 
GGGCCUGCUGCUGUUGAGU--         U   --|  U   UC   U    A   UGAAGUA 
                     GCUUUUUGU CUA  AGG GCA  UAG GCAG UAG       G
                     UGAAGAAUA GGU  UCC CGU  AUC CGUC AUC       A
CUUAAUAACCUACUUAUGUAU         C   CU^  U   GA   C    -   UACGAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-17-P2a_5p

mirBase accession

MIMAT0002702

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-18a-5p

Star sequence

Mml-Mir-17-P2a_3p*

mirBase accession

MIMAT0026595

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence

Proposed targets

TargetScanVert: mml-miR-18a-3p