MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-17-P2a1

Family name MIR-17 (all species)
Seed AAGGUGC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-18a
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a2  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Dre-Mir-17-P4c  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a1  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Tni-Mir-17-P2a1  Xtr-Mir-17-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr1: 3298014-3298078 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a1)
Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCAAGACACCCAACCUAACGGCUUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCACGAGGGUCUGUGACUUGCAUCCAUAUAUA
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Structure
        10        20          30          40        50        60 
GGCAAGACACCCAACCUA    --          --|  U   UC   U    A   UGAAGUA 
                  ACGG  CUUUGUGCUA  AGG GCA  UAG GCAG UAG       G
                  UGUC  GGAGCACGGU  UCC CGU  AUC CGUC AUC       A
AUAUAUACCUACGUUCAG    UG          CU^  U   GA   C    -   CACGAUC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P2a1_5p

mirBase accessionMIMAT0001779
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Proposed targets TargetScanFish: dre-miR-18a
Star sequence

Dre-Mir-17-P2a1_3p*

mirBase accessionNone
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
Get sequence