Mir-17-P2a1

MirGeneDB ID

Dre-Mir-17-P2a1

Family name

MIR-17 (all species)

Seed

AAGGUGC

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-18a

Paralogues

Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Dre-Mir-17-P2a2 Dre-Mir-17-P2c Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Dre-Mir-17-P4c Dre-Mir-17-P4d

Orthologues

Aca-Mir-17-P2a Ami-Mir-17-P2a Bta-Mir-17-P2a Cfa-Mir-17-P2a Cja-Mir-17-P2a Cli-Mir-17-P2a Cmi-Mir-17-P2a Cpi-Mir-17-P2a Cpo-Mir-17-P2a Dno-Mir-17-P2a Eca-Mir-17-P2a Ete-Mir-17-P2a Gga-Mir-17-P2a Gja-Mir-17-P2a Gmo-Mir-17-P2a1 Hsa-Mir-17-P2a Laf-Mir-17-P2a Lch-Mir-17-P2a Loc-Mir-17-P2a Mdo-Mir-17-P2a Mml-Mir-17-P2a Mmr-Mir-17-P2a Mmu-Mir-17-P2a Mun-Mir-17-P2a Neu-Mir-17-P2a Oan-Mir-17-P2a Ocu-Mir-17-P2a Pab-Mir-17-P2a Pbv-Mir-17-P2a Rno-Mir-17-P2a Sha-Mir-17-P2a Spt-Mir-17-P2a Sto-Mir-17-P2a Tgu-Mir-17-P2a Tni-Mir-17-P2a1 Xtr-Mir-17-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr1: 3298014-3298078 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2a1)

Mir-92-P1a1 chr1: 3297377-3297435 [-] UCSC Ensembl
Mir-19-P2a1 chr1: 3297494-3297555 [-] UCSC Ensembl
Mir-17-P4a1 chr1: 3297646-3297705 [-] UCSC Ensembl
Mir-19-P1a1 chr1: 3297862-3297919 [-] UCSC Ensembl
Mir-17-P2a1 chr1: 3298014-3298078 [-] UCSC Ensembl
Mir-17-P1a1 chr1: 3298149-3298209 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAAGACACCCAACCUAACGGCUUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCACCUACUGCCCUAAGUGCUCCUUCUGGCACGAGGGUCUGUGACUUGCAUCCAUAUAUA

Get precursor sequence

Structure

        10        20          30          40        50        60 
GGCAAGACACCCAACCUA    --          --|  U   UC   U    A   UGAAGUA 
                  ACGG  CUUUGUGCUA  AGG GCA  UAG GCAG UAG       G
                  UGUC  GGAGCACGGU  UCC CGU  AUC CGUC AUC       A
AUAUAUACCUACGUUCAG    UG          CU^  U   GA   C    -   CACGAUC 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-17-P2a1_5p

mirBase accession

MIMAT0001779

Sequence

0- UAAGGUGCAUCUAGUGCAGAUAG -23

Get sequence

Proposed targets

TargetScanFish: dre-miR-18a

Star sequence

Dre-Mir-17-P2a1_3p*

mirBase accession

None

Sequence

41- ACUGCCCUAAGUGCUCCUUCUGGC -65

Get sequence