MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-17-P2a2

Family name MIR-17 (all species)
Seed AAGGUGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Tni-Mir-17-P1d  Tni-Mir-17-P2a1  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Tni-Mir-17-P4d 
Orthologues Aca-Mir-17-P2a  Ami-Mir-17-P2a  Bta-Mir-17-P2a  Cfa-Mir-17-P2a  Cli-Mir-17-P2a  Cmi-Mir-17-P2a  Cpi-Mir-17-P2a  Cpo-Mir-17-P2a  Dno-Mir-17-P2a  Dre-Mir-17-P2a2  Ete-Mir-17-P2a  Gga-Mir-17-P2a  Gja-Mir-17-P2a  Gmo-Mir-17-P2a2  Hsa-Mir-17-P2a  Lch-Mir-17-P2a  Loc-Mir-17-P2a  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mdo-Mir-17-P2a  Mml-Mir-17-P2a  Mmu-Mir-17-P2a  Mun-Mir-17-P2a  Oan-Mir-17-P2a  Ocu-Mir-17-P2a  Pbv-Mir-17-P2a  Rno-Mir-17-P2a  Sha-Mir-17-P2a  Spt-Mir-17-P2a  Sto-Mir-17-P2a  Tgu-Mir-17-P2a  Xtr-Mir-17-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
2: 12892243-12892307 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2a2)
Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUUGUGUGCCUUUUUUCUGGUGCUCAUGCUAAGGUGCAUCUAGUGCAGAUAGUGAAGUAGACUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCAUGAGGGACUGGGUCUGUCAUCGGUCCACC
Get precursor sequence
Structure
        10         20         30          40        50        60 
AGUUGUGUGCCUUUUUU- UG  G -        --|  U   UC   U    A   UGAAGUA 
                  C  GU C UCAUGCUA  AGG GCA  UAG GCAG UAG       G
                  G  CA G AGUACGGU  UCC CGU  AUC CGUC AUC       A
CCACCUGGCUACUGUCUG GU  G G        CU^  U   GA   C    -   UACGAUC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P2a2_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Tni-Mir-17-P2a2_3p*

mirBase accessionNone
Sequence
41- ACUGCCCUAAGUGCUCCUUCUGGC -65
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