MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-92-P1a2

Family name MIR-92 (all species)
Seed AUUGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-92-1
Paralogues Tni-Mir-92-P1a1  Tni-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Xtr-Mir-92-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
2: 12892725-12892783 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a2)
Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUCCACCCAAAGUGUUCCUUUCCUGUACAGGUUGGGAGAGGUAGCAAUGCUCGGAGUUCAUGUGGUAUUGCACUUGUCCCGGCCUGUGGAGGAAGAAAGGAACUGCUCUGCACCAGC
Get precursor sequence
Structure
        10        20          30        40        50         
GAAUCCACCCAAAGUGUUCC--|     G            G    A        CGGAG 
                      UUUCCU UACAGGUUGGGA AGGU GCAAUGCU     U
                      GAAGGA GUGUCCGGCCCU UUCA CGUUAUGG     U
CGACCACGUCUCGUCAAGGAAA^     G            G    -        UGUAC 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-92-P1a2_5p*

mirBase accessionNone
Sequence
0- AGGUUGGGAGAGGUAGCAAUGCU -23
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Mature sequence

Tni-Mir-92-P1a2_3p

mirBase accessionMIMAT0002925
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
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