MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-92-P1b  Sto-Mir-92-P1c  Sto-Mir-92-P1d  Sto-Mir-92-P2a  Sto-Mir-92-P2b  Sto-Mir-92-P2c 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Bta-Mir-92-P1a  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_003427355_STO_add)
BFAA01005422.1: 25076-25135 [-]
Precursor
(pre-Mir +30nt flank)
AAGUGUGCUCUCUGCAACCCUGUCCUGCAUAGGUUGGGAUUUAUUGCAAUGCUGACAAAUGCACUUGGUAUUGCACUUGUCCCGGCCUGUUAAGGAUGGUGGGCAUAGUUGGAAUUAGCA
Get precursor sequence
Structure
        10          20        30        40        50          
AAGUGUGCUCUCUGCAA-  -|      GC            UUAU         GACAAA 
                  CC CUGUCCU  AUAGGUUGGGAU    UGCAAUGCU      \
                  GG GGUAGGA  UGUCCGGCCCUG    ACGUUAUGG      U
ACGAUUAAGGUUGAUACG  U^      AU            UUC-         UUCACG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Sto-Mir-92-P1a_5p*

mirBase accessionNone
Sequence
0- AGGUUGGGAUUUAUUGCAAUGCU -23
Get sequence
Mature sequence

Sto-Mir-92-P1a_3p

mirBase accessionNone
Sequence
38- UAUUGCACUUGUCCCGGCCUGU -60
Get sequence