Mir-92-P1c

MirGeneDB ID

Sto-Mir-92-P1c

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-92-P1a Sto-Mir-92-P1b Sto-Mir-92-P1d Sto-Mir-92-P2a Sto-Mir-92-P2b Sto-Mir-92-P2c

Orthologues

Aca-Mir-92-P1c Ami-Mir-92-P1c Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1c Cel-Mir-92 Cfa-Mir-92-P1c Cja-Mir-92-P1c Cli-Mir-92-P1c Cmi-Mir-92-P1c Cpi-Mir-92-P1c Cpo-Mir-92-P1c Dno-Mir-92-P1c Eca-Mir-92-P1c Esc-Mir-92 Ete-Mir-92-P1c Gga-Mir-92-P1c Gja-Mir-92-P1c Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1c Isc-Mir-92 Laf-Mir-92-P1c Mdo-Mir-92-P1c Mml-Mir-92-P1c Mmr-Mir-92-P1c Mmu-Mir-92-P1c Mun-Mir-92-P1c Neu-Mir-92-P1c Oan-Mir-92-P1c Obi-Mir-92 Ocu-Mir-92-P1c Pab-Mir-92-P1c Pbv-Mir-92-P1c Rno-Mir-92-P1c Sha-Mir-92-P1c Sme-Mir-92 Spt-Mir-92-P1c Tgu-Mir-92-P1c Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xtr-Mir-92-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01013767.1: 5248-5309 [+]

Precursor
(pre-Mir +30nt flank)

AGCAGUAGCAGUGCAGGCUGGUUUCUGCAUGGGUGGGGAUUUGUUGCAUUACUGGGUCUUGUGUUAACAGUAUUGCACUUGUCCCGGCCUGUGGAGGACAAAAAGACUUGACGGCAAAUGGA

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Structure

        10        20          30        40        50        60 
AGCAGUAGCAGUGCAGGCUGGU--|   G       G     UU  U   U    GGGUCUU 
                        UUCU CAUGGGU GGGAU  GU GCA UACU       \
                        AGGA GUGUCCG CCCUG  CA CGU AUGA       G
AGGUAAACGGCAGUUCAGAAAAAC^   G       G     UU  -   U    CAAUUGU 
120       110       100        90        80         70

Deep sequencing

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Comment

There is a second Drosha cut +1 on the 5p arm.

3' NTU

Motifs

Tissue expression

To

Star sequence

Sto-Mir-92-P1c_5p*

mirBase accession

None

Sequence

0- GGGUGGGGAUUUGUUGCAUUACU -23

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Mature sequence

Sto-Mir-92-P1c_3p

mirBase accession

None

Sequence

40- UAUUGCACUUGUCCCGGCCUGU -62

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