Mir-92-P1a1

MirGeneDB ID

Gmo-Mir-92-P1a1

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-92-2

Paralogues

Gmo-Mir-92-P1a2 Gmo-Mir-92-P2c Gmo-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Xtr-Mir-92-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

scaffold07760: 2088-2144 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGGGCGGUAUGACCUGUCCACUCCGUCACAGGUGGGGCCGAGCAGCAAUGCUGCGUAGCGACGGUAUUGCACUUGUCCCGGCCUGUGAAGGGGCUAGGAGAUAACCACUUUUCCUC

Get precursor sequence

Structure

        10        20          30        40        50        
GGGGGCGGUAUGACCUGU  A--|   G        G   C    CA        GCGU 
                  CC   CUCC UCACAGGU GGG CGAG  GCAAUGCU    A
                  GG   GGGG AGUGUCCG CCC GUUC  CGUUAUGG    G
CUCCUUUUCACCAAUAGA  AUC^   A        G   U    A-        CAGC 
     110       100        90        80         70        60