Mir-92-P1a2

MirGeneDB ID

Gmo-Mir-92-P1a2

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-92-1

Paralogues

Gmo-Mir-92-P1a1 Gmo-Mir-92-P2c Gmo-Mir-92-P2d

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a2 Xtr-Mir-92-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_918: 373563-373620 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a2)

Mir-17-P1a2 GeneScaffold_918: 372883-372941 [+] UCSC Ensembl
Mir-17-P2a2 GeneScaffold_918: 373010-373074 [+] UCSC Ensembl
Mir-19-P1a2 GeneScaffold_918: 373145-373201 [+] UCSC Ensembl
Mir-17-P4a2 GeneScaffold_918: 373326-373385 [+] UCSC Ensembl
Mir-19-P2a2 GeneScaffold_918: 373455-373516 [+] UCSC Ensembl
Mir-92-P1a2 GeneScaffold_918: 373563-373620 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCUGGUCGAAGCCAUCCCUUUUCUGUGCAGGUUGGGAGAGGUGACAAUGCUCUGUUUGGGAUGGUAUUGCACUUGUCCCGGCCUGUUGAGGACUUGGGGAACGUAGCUGCUUCCUU

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Structure

        10         20         30        40        50         
AGUCUGGUCGAAGCCAU-   UUU   GU-|          G     A       CUGUU 
                  CCC   UCU   GCAGGUUGGGA AGGUG CAAUGCU     \
                  GGG   AGG   UGUCCGGCCCU UUCAC GUUAUGG     U
UUCCUUCGUCGAUGCAAG   UUC   AGU^          G     -       UAGGG 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-92-P1a2_5p*

mirBase accession

MIMAT0044325

Sequence

0- AGGUUGGGAGAGGUGACAAUGCU -23

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Mature sequence

Gmo-Mir-92-P1a2_3p

mirBase accession

None

Sequence

36- UAUUGCACUUGUCCCGGCCUGU -58

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