MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-17-P4a1

Family name MIR-17 (all species)
Seed AAAGUGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Tni-Mir-17-P1d  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Tni-Mir-17-P4a2  Tni-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Xtr-Mir-17-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 8188398-8188455 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a1)
Mir-92-P1a1 5: 8188110-8188167 [-] UCSC Ensembl
Mir-19-P2a1 5: 8188261-8188319 [-] UCSC Ensembl
Mir-19-P1a1 5: 8188599-8188656 [-] UCSC Ensembl
Mir-17-P2a1 5: 8188734-8188798 [-] UCSC Ensembl
Mir-17-P1a1 5: 8188866-8188926 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUGGUCUCAGUGAAAAUUUCAGCAGUACUAAAGUGCUUAUAGUGCAGGUAGUGUUUUCUAUCUACUGCAAUGUGAGCACUUGAAGUAUUUCUGACAGACUACAUCUCGGUGAAGCU
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Structure
        10        20          30         40        50        
UUCUGGUCUCAGUGAAAAUU--    C      A-|          G     G   UGUU 
                      UCAG AGUACU  AAGUGCUUAUA UGCAG UAG    U
                      AGUC UUAUGA  UUCACGAGUGU ACGUC AUC    U
UCGAAGUGGCUCUACAUCAGAC    U      AG^          A     -   UAUC 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P4a1_5p

mirBase accessionNone
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Tni-Mir-17-P4a1_3p*

mirBase accessionNone
Sequence
35- ACUGCAAUGUGAGCACUUGAAGU -58
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