MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-17-P4a1

Family name MIR-17 (all species)
Seed AAAGUGC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mal-Mir-17-P1d  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mal-Mir-17-P4a2  Mal-Mir-17-P4c  Mal-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Hsa-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Xtr-Mir-17-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884692.1: 2412342-2412403 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCUCAACUGACCACAGUUUCAGCAGUACUAAAGUGCUUAUAGUGCAGGUAGUGUUUUUCUCCUAUCUACUGCAAUGUGAGCACUUGAAGUACUUCUAACUAACUACAUCUUUCUGAAGAU
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Structure
        10            20        30         40        50        60
ACUCUCAACUGACCACA----|  UC  C      A-           G     G   UGUUUU 
                     GUU  AG AGUACU  AAGUGCUUAUA UGCAG UAG      U
                     CAA  UC UCAUGA  UUCACGAGUGU ACGUC AUC      C
UAGAAGUCUUUCUACAUCAAU^  --  U      AG           A     -   UAUCCU 
120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-17-P4a1_5p

mirBase accessionNone
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Mal-Mir-17-P4a1_3p*

mirBase accessionNone
Sequence
39- ACUGCAAUGUGAGCACUUGAAGU -62
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