Mir-17-P4a1

MirGeneDB ID

Mal-Mir-17-P4a1

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-17-P1a1 Mal-Mir-17-P1a2 Mal-Mir-17-P1d Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mal-Mir-17-P4a2 Mal-Mir-17-P4c Mal-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Xtr-Mir-17-P4a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884692.1: 2412342-2412403 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACUCUCAACUGACCACAGUUUCAGCAGUACUAAAGUGCUUAUAGUGCAGGUAGUGUUUUUCUCCUAUCUACUGCAAUGUGAGCACUUGAAGUACUUCUAACUAACUACAUCUUUCUGAAGAU

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Structure

        10            20        30         40        50        60
ACUCUCAACUGACCACA----|  UC  C      A-           G     G   UGUUUU 
                     GUU  AG AGUACU  AAGUGCUUAUA UGCAG UAG      U
                     CAA  UC UCAUGA  UUCACGAGUGU ACGUC AUC      C
UAGAAGUCUUUCUACAUCAAU^  --  U      AG           A     -   UAUCCU 
120       110       100          90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-17-P4a1_5p

mirBase accession

None

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

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Star sequence

Mal-Mir-17-P4a1_3p*

mirBase accession

None

Sequence

39- ACUGCAAUGUGAGCACUUGAAGU -62

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