Mir-17-P1a1

MirGeneDB ID

Mal-Mir-17-P1a1

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-17-P1a2 Mal-Mir-17-P1d Mal-Mir-17-P2a2a Mal-Mir-17-P2a2b Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mal-Mir-17-P4c Mal-Mir-17-P4d

Orthologues

Aca-Mir-17-P1a Ami-Mir-17-P1a Bta-Mir-17-P1a Cfa-Mir-17-P1a Cja-Mir-17-P1a Cli-Mir-17-P1a Cmi-Mir-17-P1a Cpi-Mir-17-P1a Cpo-Mir-17-P1a Dno-Mir-17-P1a Dre-Mir-17-P1a1 Eca-Mir-17-P1a Ete-Mir-17-P1a Gga-Mir-17-P1a Gja-Mir-17-P1a Gmo-Mir-17-P1a1 Hsa-Mir-17-P1a Laf-Mir-17-P1a Lch-Mir-17-P1a Loc-Mir-17-P1a Mdo-Mir-17-P1a Mml-Mir-17-P1a Mmr-Mir-17-P1a Mmu-Mir-17-P1a Mun-Mir-17-P1a Neu-Mir-17-P1a Oan-Mir-17-P1a Ocu-Mir-17-P1a Pab-Mir-17-P1a Pbv-Mir-17-P1a Rno-Mir-17-P1a Sha-Mir-17-P1a Spt-Mir-17-P1a Sto-Mir-17-P1a Tgu-Mir-17-P1a Tni-Mir-17-P1a1 Xtr-Mir-17-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884692.1: 2411974-2412034 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACUGGGGGACAGUAAUGUCUGUGUAUUGUCAAAGUGCUUACAGUGCAGGUAGUACUGUGUAAUACCUACUGCAGUGAAGGCACUUACAGCAAUACACUGACACUUGGGCAGAUUCUUGGG

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Structure

        10          20        30         40        50          
UACUGGGGGACAGUAAU--   U         CA-|       A  G     G   UACUGU 
                   GUC GUGUAUUGU   AAGUGCUU CA UGCAG UAG      \
                   CAG CACAUAACG   UUCACGGA GU ACGUC AUC      G
GGGUUCUUAGACGGGUUCA   U         ACA^       A  G     -   CAUAAU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-17-P1a1_5p

mirBase accession

None

Sequence

0- CAAAGUGCUUACAGUGCAGGUAG -23

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Star sequence

Mal-Mir-17-P1a1_3p*

mirBase accession

None

Sequence

38- ACUGCAGUGAAGGCACUUACAGC -61

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