MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-17
Paralogues Ocu-Mir-17-P1c  Ocu-Mir-17-P1d  Ocu-Mir-17-P2a  Ocu-Mir-17-P2c  Ocu-Mir-17-P4a  Ocu-Mir-17-P4c  Ocu-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr8: 93067701-93067760 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)
Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAAGAUUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGAAGCCAA
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Structure
        10          20        30         40        50         
ACUGAAGAUUGUGACCA--    GA       CA-|       A  G     G   UGAUA 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG     U
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC     G
AACCGAAGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Mature sequence

Ocu-Mir-17-P1a_5p

mirBase accessionMIMAT0048109
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Ocu-Mir-17-P1a_3p*

mirBase accessionMIMAT0048110
Sequence
37- ACUGCAGUGAAGGCACUUGUAGC -60
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