MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-19b-1
Paralogues Ocu-Mir-19-P1a  Ocu-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr8: 93068307-93068367 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-17-P1a chr8: 93067701-93067760 [+] UCSC Ensembl
Mir-17-P2a chr8: 93067839-93067903 [+] UCSC Ensembl
Mir-19-P1a chr8: 93067987-93068044 [+] UCSC Ensembl
Mir-17-P4a chr8: 93068174-93068232 [+] UCSC Ensembl
Mir-19-P2a chr8: 93068307-93068367 [+] UCSC Ensembl
Mir-92-P1a chr8: 93068424-93068482 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCCUGUUAUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGAAAAGUCUGUAGAAAAGUA
Get precursor sequence
Structure
        10        20          30         40         50          
CUGUCCUGUUAUGAACACUGUU--                 -  -|     UC    UGUGUG 
                        CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                        GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGAAAAGAUGUCUGAAAAGUGGU                 A  U^     --    UCUUAU 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-19-P2a_5p*

mirBase accessionMIMAT0048117
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
Mature sequence

Ocu-Mir-19-P2a_3p

mirBase accessionMIMAT0048118
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence