Mir-19-P2a

MirGeneDB ID

Pab-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-19-P1a Pab-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054693.2: 97462875-97462935 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUCCUGUUACUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUAGUGAAAAGUCUGUAGAAAAGUA

Get precursor sequence

Structure

        10            20        30         40         50          
UGUCCUGUUACUGAACA----|  UU                 -  -      UC    UGUGUG 
                     CUG  CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GAU  GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGAAAAGAUGUCUGAAAAGU^  --                 A  U      --    UCUUAU 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-19-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Mature sequence

Pab-Mir-19-P2a_3p

mirBase accession

None

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

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