Mir-19-P2a

MirGeneDB ID

Mdo-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-19b-1

Paralogues

Mdo-Mir-19-P1a Mdo-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

7: 108468317-108468377 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-92-P1a 7: 108468200-108468258 [-] UCSC Ensembl
Mir-19-P2a 7: 108468317-108468377 [-] UCSC Ensembl
Mir-17-P4a 7: 108468450-108468508 [-] UCSC Ensembl
Mir-19-P1a 7: 108468619-108468676 [-] UCSC Ensembl
Mir-17-P2a 7: 108468761-108468825 [-] UCSC Ensembl
Mir-17-P1a 7: 108468905-108468965 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAACUUUUAAUUGAGCACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGGAAAGUCAGUAGAAAAAUA

Get precursor sequence

Structure

        10         20         30         40         50          
GAACUUUUAAUUGAGCA- UG  -                 -  -|     UC    UGUAUG 
                  C  UU CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                  G  GG GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUAAAAAGAUGACUGAAA GU  U                 A  U^     --    UCUUAU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Star sequence

Mdo-Mir-19-P2a_5p*

mirBase accession

MIMAT0026708

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-19b-1-5p

Mature sequence

Mdo-Mir-19-P2a_3p

mirBase accession

MIMAT0004170

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

Get sequence

Proposed targets

TargetScanVert: mdo-miR-19b-3p