MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-19b-2
Paralogues Xtr-Mir-19-P1a  Xtr-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr2: 120019867-120019928 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-92-P1a chr2: 120019748-120019807 [-] UCSC Ensembl
Mir-19-P2a chr2: 120019867-120019928 [-] UCSC Ensembl
Mir-17-P4a chr2: 120019995-120020054 [-] UCSC Ensembl
Mir-19-P1a chr2: 120020122-120020179 [-] UCSC Ensembl
Mir-17-P2a chr2: 120020263-120020327 [-] UCSC Ensembl
Mir-17-P1a chr2: 120020393-120020454 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUACCUUAAAUCUUGGUGCUUCAUGGUUAGUUUUGCAGGUUUGCAUCCAGUUGUUCUUCUGGCUCACUGUGCAAAUCCAUGCAAAACUGAUUAUGGCACUUAAUCGGCAACUGAUCUGUG
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Structure
        10            20        30         40         50        60
AUGUACCUUAAAUCUUG----|   UU                -  -      UC    UGUUCU 
                     GUGC  CAUGGUUAGUUUUGCA GG UUUGCA  CAGU      U
                     CACG  GUAUUAGUCAAAACGU CC AAACGU  GUCA      C
GUGUCUAGUCAACGGCUAAUU^   --                A  U      --    CUCGGU 
120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
An Br Em Em He Ve
Star sequence

Xtr-Mir-19-P2a_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGU -23
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Mature sequence

Xtr-Mir-19-P2a_3p

mirBase accessionMIMAT0003567
Sequence
39- UGUGCAAAUCCAUGCAAAACUGA -62
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Proposed targets TargetScanVert: xtr-miR-19b