MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-17
Paralogues Mmu-Mir-17-P1c  Mmu-Mir-17-P1d  Mmu-Mir-17-P2a  Mmu-Mir-17-P2c  Mmu-Mir-17-P4a  Mmu-Mir-17-P4c  Mmu-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr14: 115043684-115043743 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)		 Mir-17-P1a chr14: 115043684-115043743 [+] UCSC Ensembl
Mir-17-P2a chr14: 115043867-115043931 [+] UCSC Ensembl
Mir-19-P1a chr14: 115044013-115044070 [+] UCSC Ensembl
Mir-17-P4a chr14: 115044183-115044241 [+] UCSC Ensembl
Mir-19-P2a chr14: 115044320-115044380 [+] UCSC Ensembl
Mir-92-P1a chr14: 115044437-115044497 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACUGAAGCUGUGACCAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUGUGUGCAUCUACUGCAGUGAGGGCACUUGUAGCAUUAUGCUGACAGCUGCCUCGGUGGGAGCC
Get precursor sequence
Structure
        10          20        30         40        50         
GACUGAAGCUGUGACCA--     A       CA-|      UA  G     G   UGAUG 
                   GUCAG AUAAUGU   AAGUGCU  CA UGCAG UAG     U
                   CAGUC UAUUACG   UUCACGG  GU ACGUC AUC     G
CCGAGGGUGGCUCCGUCGA     G       AUG^      GA  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-17-P1a_5p
mirBase accessionMIMAT0000649
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000649
TargetScanVert: mmu-miR-17-5p
miRDB: MIMAT0000649
Star sequence

Mmu-Mir-17-P1a_3p*
mirBase accessionMIMAT0000650
Sequence 
37- ACUGCAGUGAGGGCACUUGUAGC -60
Get sequence
Proposed targets microrna.org: MIMAT0000650
TargetScanVert: mmu-miR-17-3p
miRDB: MIMAT0000650