MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-20a
Paralogues Aca-Mir-17-P1a  Aca-Mir-17-P1c  Aca-Mir-17-P2a  Aca-Mir-17-P2c  Aca-Mir-17-P4c 
Orthologues Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343584.1: 108699-108757 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-17-P1a GL343584.1: 108268-108328 [+] UCSC Ensembl
Mir-19-P1a GL343584.1: 108539-108596 [+] UCSC Ensembl
Mir-17-P4a GL343584.1: 108699-108757 [+] UCSC Ensembl
Mir-19-P2a GL343584.1: 108837-108897 [+] UCSC Ensembl
Mir-92-P1a GL343584.1: 108950-109010 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUGCUUGUCGGAACAGCUCCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGAUUAAUAAUCUACUGCAUUACGAGCACUUAAAGUACUGCUAGCUGUAGAGCAUCAGUUUUGUCC
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Structure
        10            20        30         40        50         
GAAUGCUUGUCGGAACA----|  CCU    C   A-       UA        G   UGAUU 
                     GCU   GUAG ACU  AAGUGCU  UAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGA  AUUACGUC AUC     A
CCUGUUUUGACUACGAGAUGU^  U--    A   AA       GC        -   UAAUA 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-17-P4a_5p

mirBase accessionMIMAT0021861
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Aca-Mir-17-P4a_3p*

mirBase accessionMIMAT0021862
Sequence
36- ACUGCAUUACGAGCACUUAAAGU -59
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