MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-20a
Paralogues Cli-Mir-17-P1a  Cli-Mir-17-P1c  Cli-Mir-17-P2a  Cli-Mir-17-P2c  Cli-Mir-17-P4c 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold183: 2837507-2837565 [-]
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-92-P1a scaffold183: 2837255-2837313 [-]
Mir-19-P2a scaffold183: 2837370-2837430 [-]
Mir-17-P4a scaffold183: 2837507-2837565 [-]
Mir-19-P1a scaffold183: 2837681-2837738 [-]
Mir-17-P2a scaffold183: 2837820-2837884 [-]
Mir-17-P1a scaffold183: 2837971-2838031 [-]
Precursor
(pre-Mir +30nt flank)
CAGUCUAGUGAAUGACAGCUCUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUCACUAAUCUACUGCAUUAUAAGCACUUAAAGUACUGCUAGCUGUAGAACUACAUAUUCAGCA
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Structure
        10            20        30         40        50         
CAGUCUAGUGAAUGACA----|  CUU    C   A-                 G   UGUUC 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAAUAUUACGUC AUC     A
ACGACUUAUACAUCAAGAUGU^  U--    A   AA                 -   UAAUC 
       110       100          90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-17-P4a_5p

mirBase accessionMIMAT0038432
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Cli-Mir-17-P4a_3p*

mirBase accessionMIMAT0038433
Sequence
36- ACUGCAUUAUAAGCACUUAAAGU -59
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