MirGeneDB ID | Neu-Mir-17-P4a |
Family name |
MIR-17 (all species) |
Seed |
AAAGUGC |
Species |
Tammar Wallaby (Notamacropus eugenii) |
MiRBase ID |
|
Paralogues |
Neu-Mir-17-P1a
Neu-Mir-17-P1c
Neu-Mir-17-P2a
Neu-Mir-17-P2c
Neu-Mir-17-P4c
|
Orthologues |
Aca-Mir-17-P4a
Ami-Mir-17-P4a
Bta-Mir-17-P4a
Cfa-Mir-17-P4a
Cja-Mir-17-P4a
Cli-Mir-17-P4a
Cmi-Mir-17-P4a
Cpi-Mir-17-P4a
Cpo-Mir-17-P4a
Dno-Mir-17-P4a
Dre-Mir-17-P4a1
Dre-Mir-17-P4a2
Eca-Mir-17-P4a
Ete-Mir-17-P4a
Gga-Mir-17-P4a
Gja-Mir-17-P4a
Gmo-Mir-17-P4a1
Gmo-Mir-17-P4a2
Hsa-Mir-17-P4a
Laf-Mir-17-P4a
Lch-Mir-17-P4a
Loc-Mir-17-P4a
Mal-Mir-17-P4a1
Mal-Mir-17-P4a2
Mdo-Mir-17-P4a
Mml-Mir-17-P4a
Mmr-Mir-17-P4a
Mmu-Mir-17-P4a
Mun-Mir-17-P4a
Oan-Mir-17-P4a7
Oan-Mir-17-P4a8
Ocu-Mir-17-P4a
Pab-Mir-17-P4a
Pbv-Mir-17-P4a
Rno-Mir-17-P4a
Sha-Mir-17-P4a
Spt-Mir-17-P4a
Sto-Mir-17-P4a
Tgu-Mir-17-P4a
Tni-Mir-17-P4a1
Tni-Mir-17-P4a2
Xla-Mir-17-P4a3
Xla-Mir-17-P4a4
Xtr-Mir-17-P4a
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_028372415.1_mMacEug1.pri) |
CM051818.1: 237302436-237302494 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGUACUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGUACUUGAAAGGACA----| UUU C A- G UGUUU
GCU GUAG ACU AAGUGCUUAUAGUGCAG UAG \
CGA CGUC UGA UUCACGAGUAUUACGUC AUC A
GCUACUUCAACAUCAAGAUGU^ U-- A AG - UAUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Br |
Ce |
Fi |
Li |
Mi |
Mi |
Mi |
Mi |
Mi |
Ov |
Se |
Se |
Te |
Te |
Te |
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Mature sequence |
Neu-Mir-17-P4a_5p |
mirBase accession | None |
Sequence |
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
|
Star sequence |
Neu-Mir-17-P4a_3p* |
mirBase accession | None |
Sequence |
36- ACUGCAUUAUGAGCACUUGAAGU -59
Get sequence
|