Mir-17-P4c

MirGeneDB ID

Loc-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-17-P1a Loc-Mir-17-P1c Loc-Mir-17-P1d Loc-Mir-17-P2a Loc-Mir-17-P2c Loc-Mir-17-P4a Loc-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG7: 45790439-45790497 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGGCUGGAGGCCAUGUGUCUGGGCGGUUCCAAAGUGCUCACAGUGCAGGUAGUGUUGCCAGAUCUACUGCAGUAUGGGCACUUCUAGUAGCGCCGGACUCCUCUCCUGUCCUCCCUCU

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Structure

        10           20         30        40        50         
GUGGCUGGAGGCCAUGU---      -| GGUUCCA         CAG     G   UGUUG 
                    GUCUGG GC       AAGUGCUCA   UGCAG UAG     \
                    CAGGCC CG       UUCACGGGU   ACGUC AUC     C
UCUCCCUCCUGUCCUCUCCU      G^ AUGAUC-         AUG     -   UAGAC 
       110       100        90         80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-17-P4c_5p

mirBase accession

None

Sequence

0- CAAAGUGCUCACAGUGCAGGUAG -23

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Star sequence

Loc-Mir-17-P4c_3p*

mirBase accession

None

Sequence

36- ACUGCAGUAUGGGCACUUCUAGU -59

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