MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-17-P1a  Sha-Mir-17-P1c  Sha-Mir-17-P2a  Sha-Mir-17-P2c  Sha-Mir-17-P4a  Sha-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL867596.1: 71178-71238 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGGAGGCUGGUCCCUGGUCCUGGUAGUGCCAAAGUGCUCAUAGUGCAGGUAGUUUUUUGCAAAUGACUACUGUACUAUGGGCACUUCAGCGCUCCUGGGUAAUGUAUCACUGGGGGGUGG
Get precursor sequence
Structure
        10          20        30        40        50        60
GUGGAGGCUGGUCCCUGGU--| UG U     CA                 G   UUUUUU 
                     CC  G AGUGC  AAGUGCUCAUAGUGCAG UAG      G
                     GG  C UCGCG  UUCACGGGUAUCAUGUC AUC      C
GGUGGGGGGUCACUAUGUAAU^ GU C     AC                 -   AGUAAA 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut +2 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P4c_5p

mirBase accessionNone
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
Get sequence
Star sequence

Sha-Mir-17-P4c_3p*

mirBase accessionNone
Sequence
39- ACUGUACUAUGGGCACUUCAGC -61
Get sequence