MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cow (Bos taurus)
MiRBase ID bta-mir-20b
Paralogues Bta-Mir-17-P1a  Bta-Mir-17-P1c  Bta-Mir-17-P1d  Bta-Mir-17-P2a  Bta-Mir-17-P2c  Bta-Mir-17-P4a  Bta-Mir-17-P4d 
Orthologues Aca-Mir-17-P4c  Ami-Mir-17-P4c  Cfa-Mir-17-P4c  Cja-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Eca-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Laf-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmr-Mir-17-P4c  Mmu-Mir-17-P4c  Neu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pab-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAAAGCAUAAGAUCAGGUCCCAGUAGUACCAAAGUGCUCACAGUGCAGGUAGUUUUGGCAGCGCUCUACUGUAGUGUGGGCACUUCCAGUACUCUUGGAUGACGGCUCUUGCUGAUGCUG
Get precursor sequence
Structure
        10           20        30         40        50          
UCAAAGCAUAAGAUCAG---|   C  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCACA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUGU AUGUC AUC      C
GUCGUAGUCGUUCUCGGCAG^   U  -     ACC           G     -   UCGCGA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-17-P4c_5p

mirBase accessionMIMAT0003796
Sequence
0- CAAAGUGCUCACAGUGCAGGUAG -23
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Proposed targets TargetScanVert: bta-miR-20b
Star sequence

Bta-Mir-17-P4c_3p*

mirBase accessionNone
Sequence
38- ACUGUAGUGUGGGCACUUCCAGU -61
Get sequence