Mir-17-P4c

MirGeneDB ID

Gja-Mir-17-P4c

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-17-P1a Gja-Mir-17-P1c Gja-Mir-17-P2a Gja-Mir-17-P2c Gja-Mir-17-P4a

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gmo-Mir-17-P4c Hsa-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015169856.1: 119534-119595 [-]

Precursor
(pre-Mir +30nt flank)

UUCGUCAUACUUGCCUUGUCCUUGCAGUAGCAAAGUGCUCAUAGUGCAGGUAGUUGUUCACCCAAAUCUACUGUAAUAUGGGCACUUACAGUACUGCUGGAUCCAAAAGCACCUUGCUGUCC

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Structure

        10           20        30         40        50        60
UUCGUCAUACUUGCCUU---|   UU      GCA-           G     G   UUGUUC 
                    GUCC  GCAGUA    AAGUGCUCAUA UGCAG UAG      A
                    UAGG  CGUCAU    UUCACGGGUAU AUGUC AUC      C
CCUGUCGUUCCACGAAAACC^   U-      GACA           A     -   UAAACC 
120       110       100         90        80         70

Deep sequencing

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Comment

There is a second Dicer cut +2 on the 3p arm.

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gja-Mir-17-P4c_5p

mirBase accession

None

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

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Star sequence

Gja-Mir-17-P4c_3p*

mirBase accession

None

Sequence

39- ACUGUAAUAUGGGCACUUACAGU -62

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