MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-19-P2d

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-19d
Paralogues Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Gmo-Mir-19-P2c 
Orthologues Cmi-Mir-19-P2d  Dre-Mir-19-P2d  Lch-Mir-19-P2d  Loc-Mir-19-P2d  Mal-Mir-19-P2d  Mun-Mir-19-P2d  Tni-Mir-19-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2d)
Mir-92-P2d GeneScaffold_3767: 173042-173101 [-] UCSC Ensembl
Mir-19-P2d GeneScaffold_3767: 173195-173260 [-] UCSC Ensembl
Mir-17-P4d GeneScaffold_3767: 173469-173529 [-] UCSC Ensembl
Mir-17-P1d GeneScaffold_3767: 173694-173755 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGGUCCAGACGACGUGUCGGCUCCGGUCAGCUUUGCAGGGUGGGCAGUCAGCCUGGGUGCUUUGGAGCCGCUGUGCAAACCCAUGCAAAACUGACCGUGGCGCGACCCCAGUGCGCCUGAAGUC
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Structure
        10         20         30         40        50        60   
CGUGGUCCAGACGACGU-    -  UC       C      -|   GG   GU    CUGGGUGC 
                  GUCG GC  CGGUCAG UUUGCA GGGU  GCA  CAGC        \
                  CAGC CG  GCCAGUC AAACGU CCCA  CGU  GUCG        U
CUGAAGUCCGCGUGACCC    G  GU       A      A^   AA   --    CCGAGGUU 
    120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-19-P2d_5p*

mirBase accessionMIMAT0044241
Sequence
0- AGCUUUGCAGGGUGGGCAGUCAGC -24
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Mature sequence

Gmo-Mir-19-P2d_3p

mirBase accessionMIMAT0044242
Sequence
43- UGUGCAAACCCAUGCAAAACUGA -66
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