MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-19-P2d

Family name MIR-19 (all species)
Seed GUGCAAA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-19-P1a  Loc-Mir-19-P2a 
Orthologues Cmi-Mir-19-P2d  Dre-Mir-19-P2d  Gmo-Mir-19-P2d  Lch-Mir-19-P2d  Mal-Mir-19-P2d  Mun-Mir-19-P2d  Tni-Mir-19-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG2: 57217593-57217657 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCUCUCUUUUGCCCUGCGGGUCCCAGUCAGCUUUGCAGGGUUGCAGUCAGCCUGUGCCUGUCAGUGCCGCUGUGCAAACCCAUGCAAAACUGACUGUGGCUGGUGCCGCCUCCUCUCGCCUGC
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Structure
        10          20        30         40         50        60  
CCUCUCUCUUUUGCCCU--  G    C       C      -   -|    GU    CUGUGCCU 
                   GC GGUC CAGUCAG UUUGCA GGG UUGCA  CAGC        \
                   UG UCGG GUCAGUC AAACGU CCC AACGU  GUCG        G
CGUCCGCUCUCCUCCGCCG  G    U       A      A   A^    --    CCGUGACU 
   120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-19-P2d_5p*

mirBase accessionNone
Sequence
0- AGCUUUGCAGGGUUGCAGUCAGC -23
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Mature sequence

Loc-Mir-19-P2d_3p

mirBase accessionNone
Sequence
42- UGUGCAAACCCAUGCAAAACUGA -65
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