MirGeneDB ID | Cmi-Mir-19-P2d |
Family name |
MIR-19 (all species) |
Seed |
GUGCAAA |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-19-P1a-v1
Cmi-Mir-19-P1a-v2
Cmi-Mir-19-P1c
Cmi-Mir-19-P2a
Cmi-Mir-19-P2b
Cmi-Mir-19-P2c
|
Orthologues |
Dre-Mir-19-P2d
Gmo-Mir-19-P2d
Lch-Mir-19-P2d
Loc-Mir-19-P2d
Mal-Mir-19-P2d
Mun-Mir-19-P2d
Tni-Mir-19-P2d
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI637757.1: 1827-1885 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUUGGCAUGGCUUGCACCGGGCUCCAGUCAGCUUUGCUGGGUUGCAGCCAGCCUGUCCGACACGCUGUGCAAACCCACGCAGAACUGACUGUGGCUGAGGAGCAUCAGCACAGACUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUUGGCAUGGCUUGCA- G- UC C - ---| CAGCCUG
CC GGC CAGUCAG UUUGC UGGGUU GCAGC \
GG UCG GUCAGUC AGACG ACCCAA UGUCG U
CGUCAGACACGACUACGA AG GU A C ACG^ CACAGCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-19-P2d_5p* |
mirBase accession | None |
Sequence |
0- AGCUUUGCUGGGUUGCAGCCA -21
Get sequence
|
Mature sequence |
Cmi-Mir-19-P2d_3p |
mirBase accession | None |
Sequence |
36- UGUGCAAACCCACGCAGAACUGA -59
Get sequence
|