Mir-19-P2d

MirGeneDB ID

Cmi-Mir-19-P2d

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cmi-Mir-19-P1c Cmi-Mir-19-P2a Cmi-Mir-19-P2b Cmi-Mir-19-P2c

Orthologues

Dre-Mir-19-P2d Gmo-Mir-19-P2d Lch-Mir-19-P2d Loc-Mir-19-P2d Mal-Mir-19-P2d Mun-Mir-19-P2d Tni-Mir-19-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI637757.1: 1827-1885 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUUGGCAUGGCUUGCACCGGGCUCCAGUCAGCUUUGCUGGGUUGCAGCCAGCCUGUCCGACACGCUGUGCAAACCCACGCAGAACUGACUGUGGCUGAGGAGCAUCAGCACAGACUGC

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Structure

        10         20         30         40           50       
GGUUGGCAUGGCUUGCA-  G-   UC       C     -      ---|    CAGCCUG 
                  CC  GGC  CAGUCAG UUUGC UGGGUU   GCAGC       \
                  GG  UCG  GUCAGUC AGACG ACCCAA   UGUCG       U
CGUCAGACACGACUACGA  AG   GU       A     C      ACG^    CACAGCC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-19-P2d_5p*

mirBase accession

None

Sequence

0- AGCUUUGCUGGGUUGCAGCCA -21

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Mature sequence

Cmi-Mir-19-P2d_3p

mirBase accession

None

Sequence

36- UGUGCAAACCCACGCAGAACUGA -59

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