MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-19-P1c

Family name MIR-19 (all species)
Seed GUGCAAA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cmi-Mir-19-P2a  Cmi-Mir-19-P2b  Cmi-Mir-19-P2c  Cmi-Mir-19-P2d 
Orthologues Sto-Mir-19-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635856.1: 9595282-9595339 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAUGGCAUGGACUCUUGCAACUCUCUGCCAGUUUUGCAGUUUUGUACUACAGGAAGAAGUGACCUGUGCAAAUCUAUGCAAAACUGGUAGGGAACUGUACUACUGCUCAUUUUUAUG
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Structure
        10          20        30        40          50         
UAAUGGCAUGGACUCUU--   AC                 GU--|    ACU     AAGA 
                   GCA  UCUCUGCCAGUUUUGCA    UUUGU   ACAGG    \
                   UGU  AGGGAUGGUCAAAACGU    AAACG   UGUCC    A
GUAUUUUUACUCGUCAUCA   CA                 AUCU^    ---     AGUG 
      110       100        90        80        70           60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-19-P1c_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAGUUUUGUACUACAGG -24
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Mature sequence

Cmi-Mir-19-P1c_3p

mirBase accessionNone
Sequence
35- UGUGCAAAUCUAUGCAAAACUGG -58
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