Mir-430-P1

MirGeneDB ID

Gga-Mir-430-P1

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-302b

Paralogues

Gga-Mir-430-P2 Gga-Mir-430-P3 Gga-Mir-430-P4

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Eca-Mir-430-P1 Ete-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

4: 57084186-57084246 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P1)

Mir-430-P1 4: 57084186-57084246 [+] UCSC Ensembl
Mir-430-P2 4: 57084446-57084502 [+] UCSC Ensembl
Mir-430-P3 4: 57084749-57084807 [+] UCSC Ensembl
Mir-430-P4 4: 57085084-57085144 [+] UCSC Ensembl
Mir-92-P2a 4: 57085223-57085282 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGUAACUUUUUUUUUUGUGGACCCCUUUUACUUUAACAUGGAGGUGCUUUCUGUGAUUUUACAAAAGUAAGUGCUUCCAUGUUUUAGUAGAGGUGAAUCCUGUUCUCAAUUCUGAAAUGC

Get precursor sequence

Structure

        10         20         30        40        50          
UGGUAACUUUUUUUUUUGU-   CCC-|       UU          UG   U  GUGAUU 
                    GGA    CUUUUACU  AACAUGGAGG  CUU CU      \
                    CCU    GGAGAUGA  UUGUACCUUC  GAA GA      U
CGUAAAGUCUUAACUCUUGU   AAGU^       UU          GU   U  AAACAU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-430-P1_5p*

mirBase accession

MIMAT0003356

Sequence

0- ACUUUAACAUGGAGGUGCUUUCU -23

Get sequence

Proposed targets

TargetScanVert: gga-miR-302b-5p
miRDB: MIMAT0003356

Mature sequence

Gga-Mir-430-P1_3p

mirBase accession

MIMAT0003357

Sequence

38- UAAGUGCUUCCAUGUUUUAGUAG -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-302b-3p
miRDB: MIMAT0003357