MirGeneDB 3.0

MirGeneDB ID

Mun-Mir-430-P1

Family name MIR-430 (all species)
Seed AAGUGCU
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-430-o42  Mun-Mir-430-o43 
Orthologues Aca-Mir-430-P1  Ami-Mir-430-P1  Bta-Mir-430-P1  Cfa-Mir-430-P1  Cja-Mir-430-P1  Cli-Mir-430-P1  Cmi-Mir-430-P1  Cpi-Mir-430-P1  Cpo-Mir-430-P1  Dno-Mir-430-P1  Dre-Mir-430-o1a  Dre-Mir-430-o1b1  Dre-Mir-430-o1b2  Dre-Mir-430-o1b3  Dre-Mir-430-o1b4  Dre-Mir-430-o1b5  Dre-Mir-430-o1b6  Dre-Mir-430-o1b7  Dre-Mir-430-o1b8  Dre-Mir-430-o1c  Dre-Mir-430-o1d1  Dre-Mir-430-o1d2  Dre-Mir-430-o1d3  Dre-Mir-430-o1d4  Dre-Mir-430-o1d5  Dre-Mir-430-o1d6  Dre-Mir-430-o1d7  Dre-Mir-430-o1e1  Dre-Mir-430-o1e2  Dre-Mir-430-o1e3  Eca-Mir-430-P1  Ete-Mir-430-P1  Gga-Mir-430-P1  Hsa-Mir-430-P1  Laf-Mir-430-P1  Mdo-Mir-430-P1  Mml-Mir-430-P1  Mmr-Mir-430-P1  Mmu-Mir-430-P1  Neu-Mir-430-P1  Oan-Mir-430-P1  Ocu-Mir-430-P1  Pab-Mir-430-P1  Rno-Mir-430-P1  Sha-Mir-430-P1  Spt-Mir-430-P1  Sto-Mir-430-P1  Tgu-Mir-430-P1  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xtr-Mir-430-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Mun_miRNA_loci)
430-P1_LR594633.1:436874037-436874296: 101-160 [+]
Precursor
(pre-Mir +30nt flank)
AAGAAAAACAGACUAUUGUGGACCAAUUUCACUUUAACAUGGAGGUACUUUCUGUGUGUUUAAAAAGCAAGUGCUUCUGUGUUUUAGUGGAACUGAAUCCUAUACACUUCUGAUAAACAU
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Structure
        10         20         30        40        50         
AAGAAAAACAGACUAUUGU-   C-| A       UU               U  GUGUG 
                    GGA  CA UUUCACU  AACAUGGAGGUACUU CU     U
                    CCU  GU AAGGUGA  UUGUGUCUUCGUGAA GA     U
UACAAAUAGUCUUCACAUAU   AA^ C       UU               C  AAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Mun-Mir-430-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAACAUGGAGGUACUUUCU -23
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Mature sequence

Mun-Mir-430-P1_3p (predicted)

mirBase accessionNone
Sequence
37- CAAGUGCUUCUGUGUUUUAGUGG -60
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