MirGeneDB 2.1

MirGeneDB ID

Ocu-Mir-430-P1

Family name MIR-430 (all species)
Seed AAGUGCU
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-302b
Paralogues Ocu-Mir-430-P2  Ocu-Mir-430-P3  Ocu-Mir-430-P4  Ocu-Mir-430-P5 
Orthologues Aca-Mir-430-P1  Ami-Mir-430-P1  Bta-Mir-430-P1  Cfa-Mir-430-P1  Cli-Mir-430-P1  Cmi-Mir-430-P1  Cpi-Mir-430-P1  Cpo-Mir-430-P1  Dno-Mir-430-P1  Dre-Mir-430-o1a  Dre-Mir-430-o1b1  Dre-Mir-430-o1b2  Dre-Mir-430-o1b3  Dre-Mir-430-o1b4  Dre-Mir-430-o1b5  Dre-Mir-430-o1b6  Dre-Mir-430-o1b7  Dre-Mir-430-o1b8  Dre-Mir-430-o1c  Dre-Mir-430-o1d1  Dre-Mir-430-o1d2  Dre-Mir-430-o1d3  Dre-Mir-430-o1d4  Dre-Mir-430-o1d5  Dre-Mir-430-o1d6  Dre-Mir-430-o1d7  Dre-Mir-430-o1e1  Dre-Mir-430-o1e2  Dre-Mir-430-o1e3  Ete-Mir-430-P1  Gga-Mir-430-P1  Hsa-Mir-430-P1  Mdo-Mir-430-P1  Mml-Mir-430-P1  Mmu-Mir-430-P1  Mun-Mir-430-P1  Oan-Mir-430-P1  Rno-Mir-430-P1  Sha-Mir-430-P1  Spt-Mir-430-P1  Sto-Mir-430-P1  Tgu-Mir-430-P1  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xtr-Mir-430-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(oryCun2_add)
chr15: 36769637-36769702 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P1)
Mir-430-P1 chr15: 36769637-36769702 [+] UCSC Ensembl
Mir-430-P2 chr15: 36769775-36769834 [+] UCSC Ensembl
Mir-430-P3 chr15: 36769951-36770011 [+] UCSC Ensembl
Mir-430-P4 chr15: 36770114-36770174 [+] UCSC Ensembl
Mir-92-P2a chr15: 36770238-36770297 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCUUGGUUGAAGGGUGGACUCCCUUCAACUUUAACAUGGAGGUGCUUUCUGUGACUUUCGUUAGAAAAAGUAAGUGCUUCCAUGUUUUAGUCGAAGUGAAUUCAGCUUACUCCUACAAAUCGA
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Structure
        10          20        30        40        50        60  
GCUCCUUGGUUGAAGGG--|   C  C    A   UU          UG   U  GUGACUUU 
                   UGGA UC CUUC ACU  AACAUGGAGG  CUU CU        C
                   ACUU AG GAAG UGA  UUGUACCUUC  GAA GA        G
AGCUAAACAUCCUCAUUCG^   A  U    C   UU          GU   U  AAAAGAUU 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-430-P1_5p* (predicted)

mirBase accessionMIMAT0036316
Sequence
0- ACUUUAACAUGGAGGUGCUUUCU -23
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Mature sequence

Ocu-Mir-430-P1_3p

mirBase accessionMIMAT0036317
Sequence
43- UAAGUGCUUCCAUGUUUUAGUCG -66
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