Mir-430-P1

MirGeneDB ID

Eca-Mir-430-P1

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-302b

Paralogues

Eca-Mir-430-P2 Eca-Mir-430-P3 Eca-Mir-430-P4 Eca-Mir-430-P5 Eca-Mir-430-P6 Eca-Mir-430-P7

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 114120447-114120508 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P1)

Mir-430-P1 CM009149.1: 114120447-114120508 [+] UCSC Ensembl
Mir-430-P2 CM009149.1: 114120580-114120639 [+] UCSC Ensembl
Mir-430-P3 CM009149.1: 114120752-114120812 [+] UCSC Ensembl
Mir-430-P4 CM009149.1: 114120912-114120972 [+] UCSC Ensembl
Mir-92-P2a CM009149.1: 114121041-114121100 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCACCCCUCGAGUGGAUGGACUCUCUUUAACUUUAACAUGGACGUGCUUUCUGUGACUUGCAAAAUAGUAAGUGCUUCCAUGUUUUAGUAGAAGUGAAUCCAAAUUAUUCCUCUGGAUGCA

Get precursor sequence

Structure

        10          20        30        40        50        60
CUCACCCCUCGAGUGGA--|   C  U    A   UU        C UG   U  GUGACU 
                   UGGA UC CUUU ACU  AACAUGGA G  CUU CU      U
                   ACCU AG GAAG UGA  UUGUACCU C  GAA GA      G
ACGUAGGUCUCCUUAUUAA^   A  U    A   UU        U GU   U  UAAAAC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Star sequence

Eca-Mir-430-P1_5p*

mirBase accession

None

Sequence

0- ACUUUAACAUGGACGUGCUUUCU -23

Get sequence

Mature sequence

Eca-Mir-430-P1_3p

mirBase accession

MIMAT0012912

Sequence

39- UAAGUGCUUCCAUGUUUUAGUAG -62

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