Mir-430-P1a

MirGeneDB ID

Xla-Mir-430-P1a

Family name

MIR-430 (all species)

Seed

CUUUAAC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-430-o4a Xla-Mir-430-o4b Xla-Mir-430-o5o1 Xla-Mir-430-o5o2 Xla-Mir-430-o5p1 Xla-Mir-430-o5p2 Xla-Mir-430-o5q1 Xla-Mir-430-o5q2 Xla-Mir-430-o5r Xla-Mir-430-o5s Xla-Mir-430-o6a Xla-Mir-430-o6b Xla-Mir-430-o7a Xla-Mir-430-o7b Xla-Mir-430-o8a Xla-Mir-430-o8b Xla-Mir-430-o9 Xla-Mir-430-P1b Xla-Mir-430-P3a Xla-Mir-430-P3b

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cja-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Eca-Mir-430-P1 Ete-Mir-430-P1 Gga-Mir-430-P1 Hsa-Mir-430-P1 Laf-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmr-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Neu-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Pab-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xtr-Mir-430-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030724.1: 61970687-61970748 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAUUAAUGGAAGAGGAAGAUUACCCCACUACUUUAACAUCGGUGUACUUUCUGUGUCUUUAAAAAGGGUAAGUGCUCCAAUGUUUUAGUAUUGGGGAAUCCUUAAUGCAACUUCAAAGUAC

Get precursor sequence

Structure

        10           20        30        40        50           
CAAUUAAUGGAAGAGGAA---|   A     C    UU     C  U      -   GUGUCU 
                     GAUU CCCCA UACU  AACAU GG GUACUU UCU      \
                     CUAA GGGGU AUGA  UUGUA CC CGUGAA GGG      U
CAUGAAACUUCAACGUAAUUC^   -     U    UU     A  U      U   AAAAAU 
120       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-430-P1a_5p

mirBase accession

None

Sequence

0- ACUUUAACAUCGGUGUACUUUCU -23

Get sequence

Star sequence

Xla-Mir-430-P1a_3p*

mirBase accession

None

Sequence

39- UAAGUGCUCCAAUGUUUUAGUAU -62

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