MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-430-o9

Family name MIR-430 (all species)
Seed AAAAGUG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-430-o4a  Xla-Mir-430-o4b  Xla-Mir-430-o5o1  Xla-Mir-430-o5o2  Xla-Mir-430-o5p1  Xla-Mir-430-o5p2  Xla-Mir-430-o5q1  Xla-Mir-430-o5q2  Xla-Mir-430-o5r  Xla-Mir-430-o5s  Xla-Mir-430-o6a  Xla-Mir-430-o6b  Xla-Mir-430-o7a  Xla-Mir-430-o7b  Xla-Mir-430-o8a  Xla-Mir-430-o8b  Xla-Mir-430-P1a  Xla-Mir-430-P1b  Xla-Mir-430-P3a  Xla-Mir-430-P3b 
Orthologues Cja-Mir-430-P9  Hsa-Mir-430-P9  Mml-Mir-430-P9  Pab-Mir-430-P9a  Pab-Mir-430-P9b 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030738.1: 762899-762959 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-o9)		 Mir-430-o7a NC_030738.1: 764304-764364 [+] UCSC Ensembl
Mir-430-o8a NC_030738.1: 764746-764803 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUAUUGCCACACUGGUAGGUACAUUACCCUAAACAGGGCACUUUCUCUGUGCGUUAUAAUUGGGAAAAGUGCUUUCUUGUUUGGGCCACUGUGCCGGCCAAUGUUUGUGUGGUGGGGG
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Structure
        10           20        30        40            50       
GUUGUAUUGCCACACUG---  A      UUAC          ---    -|     UGUGCG 
                    GU GGUACA    CCUAAACAGG   GCAC UUUCUC      U
                    CG CCGUGU    GGGUUUGUUC   CGUG AAAGGG      U
GGGGGUGGUGUGUUUGUAAC  G      CACC          UUU    A^     UUAAUA 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Em
Star sequence

Xla-Mir-430-o9_5p*
mirBase accessionNone
Sequence 
0- CCUAAACAGGGCACUUUCUC -20
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Mature sequence

Xla-Mir-430-o9_3p
mirBase accessionNone
Sequence 
36- GAAAAGUGCUUUCUUGUUUGGGCCA -61
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