| MirGeneDB ID | Xla-Mir-430-o5o2 |
|---|
| Family name |
MIR-430 (all species) |
|---|
| Seed |
CCCAAAA |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-430-o4a
Xla-Mir-430-o4b
Xla-Mir-430-o5o1
Xla-Mir-430-o5p1
Xla-Mir-430-o5p2
Xla-Mir-430-o5q1
Xla-Mir-430-o5q2
Xla-Mir-430-o5r
Xla-Mir-430-o5s
Xla-Mir-430-o6a
Xla-Mir-430-o6b
Xla-Mir-430-o7a
Xla-Mir-430-o7b
Xla-Mir-430-o8a
Xla-Mir-430-o8b
Xla-Mir-430-o9
Xla-Mir-430-P1a
Xla-Mir-430-P1b
Xla-Mir-430-P3a
Xla-Mir-430-P3b
|
|---|
| Orthologues |
Bta-Mir-430-P5
Cja-Mir-430-P5
Cpo-Mir-430-P5
Dno-Mir-430-P5
Eca-Mir-430-P5
Ete-Mir-430-P5
Hsa-Mir-430-P5
Laf-Mir-430-P5
Mml-Mir-430-P5
Ocu-Mir-430-P5
Pab-Mir-430-P5
|
|---|
| Node of Origin (locus) |
X. laevis
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_001663975.1_XLA_v2) |
NC_030724.1: 217940062-217940123 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAUUUUCAAUGCAAAGCCAAUUUUACAUUACCCAAAACUAGGCCCUCUCUUGUGUUUCAAUUAUUAAGAAAGUGCUUUUUGUUUUGGGCAUUGUAUGUUUUGGGCACUCCAUUUAGAAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAAUUUUCAAUGCAAAG- UUU- UUA U--| C C UGUGUUU
CCAA UACA CCCAAAAC AGGC CU UCU C
GGUU AUGU GGGUUUUG UUCG GA AGA A
CUAAAGAUUUACCUCACG UUGU UAC UUU^ U A AUUAUUA
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-430-o5o2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCAAAACUAGGCCCUCUCU -21
Get sequence
|
|---|
| Star sequence |
Xla-Mir-430-o5o2_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- AAAGUGCUUUUUGUUUUGGGCAU -62
Get sequence
|
|---|
