Mir-430-P5

MirGeneDB ID

Cpo-Mir-430-P5

Family name

MIR-430 (all species)

Seed

AGUGCCG

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-290

Paralogues

Cpo-Mir-430-o28 Cpo-Mir-430-P1 Cpo-Mir-430-P2 Cpo-Mir-430-P3 Cpo-Mir-430-P4

Orthologues

Bta-Mir-430-P5 Cfa-Mir-430-P5d1 Cfa-Mir-430-P5d2 Cja-Mir-430-P5 Dno-Mir-430-P5 Eca-Mir-430-P5 Ete-Mir-430-P5 Hsa-Mir-430-P5 Laf-Mir-430-P5 Mml-Mir-430-P5 Mmr-Mir-430-P5e Mmr-Mir-430-P5f Mmu-Mir-430-P5a Mmu-Mir-430-P5b Mmu-Mir-430-P5c Ocu-Mir-430-P5 Pab-Mir-430-P5 Rno-Mir-430-P5a Rno-Mir-430-P5b Rno-Mir-430-P5c Xla-Mir-430-o5o1 Xla-Mir-430-o5o2 Xla-Mir-430-o5p1 Xla-Mir-430-o5p2 Xla-Mir-430-o5q1 Xla-Mir-430-o5q2 Xla-Mir-430-o5r Xla-Mir-430-o5s Xtr-Mir-430-o5a1 Xtr-Mir-430-o5a2 Xtr-Mir-430-o5a3 Xtr-Mir-430-o5a4 Xtr-Mir-430-o5a5 Xtr-Mir-430-o5a6 Xtr-Mir-430-o5a7 Xtr-Mir-430-o5a8 Xtr-Mir-430-o5a9 Xtr-Mir-430-o5a10 Xtr-Mir-430-o5a11 Xtr-Mir-430-o5a12 Xtr-Mir-430-o5a13 Xtr-Mir-430-o5a14 Xtr-Mir-430-o5a15 Xtr-Mir-430-o5a16 Xtr-Mir-430-o5a17 Xtr-Mir-430-o5a18 Xtr-Mir-430-o5a19 Xtr-Mir-430-o5a20 Xtr-Mir-430-o5a21 Xtr-Mir-430-o5a22 Xtr-Mir-430-o5a23 Xtr-Mir-430-o5b Xtr-Mir-430-o5c1 Xtr-Mir-430-o5c2 Xtr-Mir-430-o5c3 Xtr-Mir-430-o5c4 Xtr-Mir-430-o5c5 Xtr-Mir-430-o5c6 Xtr-Mir-430-o5c7 Xtr-Mir-430-o5c8 Xtr-Mir-430-o5c9 Xtr-Mir-430-o5c10 Xtr-Mir-430-o5c11 Xtr-Mir-430-o5c12 Xtr-Mir-430-o5c13 Xtr-Mir-430-o5c14 Xtr-Mir-430-o5c15 Xtr-Mir-430-o5c16 Xtr-Mir-430-o5c17 Xtr-Mir-430-o5c18 Xtr-Mir-430-o5c19 Xtr-Mir-430-o5c20 Xtr-Mir-430-o5c21 Xtr-Mir-430-o5c22 Xtr-Mir-430-o5c23 Xtr-Mir-430-o5c24 Xtr-Mir-430-o5c25 Xtr-Mir-430-o5d1 Xtr-Mir-430-o5d2 Xtr-Mir-430-o5e Xtr-Mir-430-o5f1 Xtr-Mir-430-o5f2 Xtr-Mir-430-o5g Xtr-Mir-430-o5h Xtr-Mir-430-o5j Xtr-Mir-430-o5k1 Xtr-Mir-430-o5k2 Xtr-Mir-430-o5k3 Xtr-Mir-430-o5k4 Xtr-Mir-430-o5k5 Xtr-Mir-430-o5k6 Xtr-Mir-430-o5k7 Xtr-Mir-430-o5k8 Xtr-Mir-430-o5k9 Xtr-Mir-430-o5k10 Xtr-Mir-430-o5k11 Xtr-Mir-430-o5k12 Xtr-Mir-430-o5k13 Xtr-Mir-430-o5k14 Xtr-Mir-430-o5k15 Xtr-Mir-430-o5k16 Xtr-Mir-430-o5k17 Xtr-Mir-430-o5k18 Xtr-Mir-430-o5k19 Xtr-Mir-430-o5k20 Xtr-Mir-430-o5k21 Xtr-Mir-430-o5k22 Xtr-Mir-430-o5k23 Xtr-Mir-430-o5k24 Xtr-Mir-430-o5k25 Xtr-Mir-430-o5k26 Xtr-Mir-430-o5k27 Xtr-Mir-430-o5l1 Xtr-Mir-430-o5l2 Xtr-Mir-430-o5l3 Xtr-Mir-430-o5l4 Xtr-Mir-430-o5l5 Xtr-Mir-430-o5l6 Xtr-Mir-430-o5l7 Xtr-Mir-430-o5l8 Xtr-Mir-430-o5l9 Xtr-Mir-430-o5l10 Xtr-Mir-430-o5l11 Xtr-Mir-430-o5l12 Xtr-Mir-430-o5l13 Xtr-Mir-430-o5l14 Xtr-Mir-430-o5l15 Xtr-Mir-430-o5l16 Xtr-Mir-430-o5l17 Xtr-Mir-430-o5l18 Xtr-Mir-430-o5l19 Xtr-Mir-430-o5m Xtr-Mir-430-o5n1 Xtr-Mir-430-o5n2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_70: 3074407-3074465 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-430-P5)

Mir-430-P5 scaffold_70: 3074407-3074465 [-] UCSC
Mir-430-o28 scaffold_70: 3095374-3095431 [-] UCSC

Precursor
(pre-Mir +30nt flank)

GCUCUGGCCCAGGUCUCCUCUGUCUGCGCCACUCAAACUUCGGGGGCACUUUGUAAUGUGGACCUAAAGUGCCGCUGGGUUCUGAGUGGCGCCGGUGGAGACUACGACCUGCUGCGCCC

Get precursor sequence

Structure

        10          20        30         40        50         
GCUCUGGCCCAGGUCUC--   UG  U          -|   U   G         UAAUG 
                   CUC  UC GCGCCACUCA AACU CGG GGCACUUUG     \
                   GAG  GG CGCGGUGAGU UUGG GUC CCGUGAAAU     U
CCCGCGUCGUCCAGCAUCA   GU  C          C^   -   G         CCAGG 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-430-P5_5p* (predicted)

mirBase accession

MIMAT0047203

Sequence

0- ACUCAAACUUCGGGGGCACUUUG -23

Get sequence

Mature sequence

Cpo-Mir-430-P5_3p (predicted)

mirBase accession

MIMAT0047204

Sequence

36- AAGUGCCGCUGGGUUCUGAGUGG -59

Get sequence