MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-430-P2

Family name MIR-430 (all species)
Seed AAGUGCU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-302c
Paralogues Cpo-Mir-430-o28  Cpo-Mir-430-P1  Cpo-Mir-430-P3  Cpo-Mir-430-P4  Cpo-Mir-430-P5 
Orthologues Ami-Mir-430-P2  Bta-Mir-430-P2  Cfa-Mir-430-P2  Cja-Mir-430-P2  Cli-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Eca-Mir-430-P2  Ete-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Laf-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmr-Mir-430-P2  Mmu-Mir-430-P2  Neu-Mir-430-P2  Oan-Mir-430-P2  Ocu-Mir-430-P2  Pab-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_43: 11472099-11472157 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P2)
Mir-92-P2a scaffold_43: 11471746-11471805 [-] UCSC
Mir-430-P4 scaffold_43: 11471856-11471915 [-] UCSC
Mir-430-P3 scaffold_43: 11471975-11472035 [-] UCSC
Mir-430-P2 scaffold_43: 11472099-11472157 [-] UCSC
Mir-430-P1 scaffold_43: 11472221-11472282 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CACCUCUAGCUCAGCCGAGGGGCCCCCUUUGCUUUAACAUGGGGGUACCUGCUGUGCAAAGGAAAGUAAGUGCUUCCAUGUUUGAGUGGAGGUGUCUCCCGAGCAGCACGACCUCCGCA
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Structure
        10         20         30        40        50         
CACCUCUAGCUCAGCCGA-    CCC-|   UG   U             C    GUGCA 
                   GGGG    CCUU  CUU AACAUGGGGGUAC UGCU     \
                   CCCU    GGAG  GAG UUGUACCUUCGUG AUGA     A
ACGCCUCCAGCACGACGAG    CUGU^   GU   U             A    AAGGA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-430-P2_5p* (predicted)

mirBase accessionMIMAT0047150
Sequence
0- GCUUUAACAUGGGGGUACCUGCU -23
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Mature sequence

Cpo-Mir-430-P2_3p

mirBase accessionMIMAT0047151
Sequence
36- UAAGUGCUUCCAUGUUUGAGUGG -59
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