MirGeneDB 3.0

MirGeneDB ID

Cli-Mir-430-P2

Family name MIR-430 (all species)
Seed AAGUGCU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-302c
Paralogues Cli-Mir-430-P1  Cli-Mir-430-P3  Cli-Mir-430-P4 
Orthologues Ami-Mir-430-P2  Bta-Mir-430-P2  Cfa-Mir-430-P2  Cja-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Cpo-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Eca-Mir-430-P2  Ete-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Laf-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmr-Mir-430-P2  Mmu-Mir-430-P2  Neu-Mir-430-P2  Oan-Mir-430-P2  Ocu-Mir-430-P2  Pab-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold942: 1626310-1626366 [+]
Clustered miRNAs
(< 50kb from Mir-430-P2)
Mir-430-P1 scaffold942: 1626026-1626086 [+]
Mir-430-P2 scaffold942: 1626310-1626366 [+]
Mir-430-P3 scaffold942: 1626451-1626510 [+]
Mir-430-P4 scaffold942: 1626806-1626867 [+]
Mir-92-P2a scaffold942: 1626979-1627038 [+]
Precursor
(pre-Mir +30nt flank)
CCACUUUUGAAUUUUAAUGGGACUCCCUUUGCUUUAACAUGGAGGUACCUGCUGCUUAGAAAAGUAAGUGCUUCCAUGUUUCAGUGGCGGUGGAUCCUAAUUCUUUACGUGUCUUUA
Get precursor sequence
Structure
        10         20         30        40        50        
CCACUUUUGAAUUUUAA-     CU -| U UG  UU             C    GCUU 
                  UGGGA  C CC U  CU  AACAUGGAGGUAC UGCU    \
                  AUCCU  G GG G  GA  UUGUACCUUCGUG AUGA    A
AUUUCUGUGCAUUUCUUA     AG U^ C GU  CU             A    AAAG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-430-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GCUUUAACAUGGAGGUACCUGCU -23
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Mature sequence

Cli-Mir-430-P2_3p

mirBase accessionMIMAT0038617
Sequence
34- UAAGUGCUUCCAUGUUUCAGUGG -57
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