MirGeneDB ID | Ete-Mir-430-P2 |
Family name |
MIR-430 (all species) |
Seed |
GCUUUAA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-430-P1
Ete-Mir-430-P3
Ete-Mir-430-P4
Ete-Mir-430-P5
Ete-Mir-430-P8
|
Orthologues |
Ami-Mir-430-P2
Bta-Mir-430-P2
Cfa-Mir-430-P2
Cli-Mir-430-P2
Cmi-Mir-430-P2
Cpi-Mir-430-P2
Cpo-Mir-430-P2
Dno-Mir-430-P2
Dre-Mir-430-o2a1
Dre-Mir-430-o2a2
Dre-Mir-430-o2a3
Dre-Mir-430-o2a4
Dre-Mir-430-o2a5
Dre-Mir-430-o2a6
Dre-Mir-430-o2a7
Dre-Mir-430-o2a8
Dre-Mir-430-o2a9
Dre-Mir-430-o2a10
Dre-Mir-430-o2a11
Dre-Mir-430-o2a12
Dre-Mir-430-o2a13
Dre-Mir-430-o2a14
Dre-Mir-430-o2b
Dre-Mir-430-o2c1
Dre-Mir-430-o2c2
Dre-Mir-430-o2c3
Dre-Mir-430-o2d1
Dre-Mir-430-o2d2
Gga-Mir-430-P2
Hsa-Mir-430-P2
Mdo-Mir-430-P2
Mml-Mir-430-P2
Mmu-Mir-430-P2
Oan-Mir-430-P2
Ocu-Mir-430-P2
Sha-Mir-430-P2
Spt-Mir-430-P2
Sto-Mir-430-P2
Tgu-Mir-430-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (echTel2) |
JH980307: 56023305-56023365 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CACGUGCAGACCCUCUGAAGGGAUCACCUUUGCUUUAACAUGGGAGUACCUGCUGUGCAAAAUGAAAGUAAGUGCUUCCAUGUUUCAGCGGAGGUGUCUCCAAAGCGACACAUUUUCAACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACGUGCAGACCCUCUGAA-| AU UU C UGUGCA
GGG CACCUUUGCU AACAUGGGAGUAC UGC A
CCU GUGGAGGCGA UUGUACCUUCGUG AUG A
UCAACUUUUACACAGCGAAA^ CU CU A AAAGUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Ete-Mir-430-P2_5p |
mirBase accession | None |
Sequence |
0- UGCUUUAACAUGGGAGUACCUGC -23
Get sequence
|
Co-mature sequence |
Ete-Mir-430-P2_3p |
mirBase accession | None |
Sequence |
38- UAAGUGCUUCCAUGUUUCAGCGG -61
Get sequence
|