MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-430-P2

Family name MIR-430 (all species)
Seed GCUUUAA
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-430-P1  Ete-Mir-430-P3  Ete-Mir-430-P4  Ete-Mir-430-P5  Ete-Mir-430-P8 
Orthologues Ami-Mir-430-P2  Bta-Mir-430-P2  Cfa-Mir-430-P2  Cja-Mir-430-P2  Cli-Mir-430-P2  Cmi-Mir-430-P2  Cpi-Mir-430-P2  Cpo-Mir-430-P2  Dno-Mir-430-P2  Dre-Mir-430-o2a1  Dre-Mir-430-o2a2  Dre-Mir-430-o2a3  Dre-Mir-430-o2a4  Dre-Mir-430-o2a5  Dre-Mir-430-o2a6  Dre-Mir-430-o2a7  Dre-Mir-430-o2a8  Dre-Mir-430-o2a9  Dre-Mir-430-o2a10  Dre-Mir-430-o2a11  Dre-Mir-430-o2a12  Dre-Mir-430-o2a13  Dre-Mir-430-o2a14  Dre-Mir-430-o2b  Dre-Mir-430-o2c1  Dre-Mir-430-o2c2  Dre-Mir-430-o2c3  Dre-Mir-430-o2d1  Dre-Mir-430-o2d2  Eca-Mir-430-P2  Gga-Mir-430-P2  Hsa-Mir-430-P2  Laf-Mir-430-P2  Mdo-Mir-430-P2  Mml-Mir-430-P2  Mmr-Mir-430-P2  Mmu-Mir-430-P2  Neu-Mir-430-P2  Oan-Mir-430-P2  Ocu-Mir-430-P2  Pab-Mir-430-P2  Sha-Mir-430-P2  Spt-Mir-430-P2  Sto-Mir-430-P2  Tgu-Mir-430-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)
JH980307: 56023305-56023365 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CACGUGCAGACCCUCUGAAGGGAUCACCUUUGCUUUAACAUGGGAGUACCUGCUGUGCAAAAUGAAAGUAAGUGCUUCCAUGUUUCAGCGGAGGUGUCUCCAAAGCGACACAUUUUCAACU
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Structure
        10         20        30        40        50        60
CACGUGCAGACCCUCUGAA-|  AU          UU             C   UGUGCA 
                    GGG  CACCUUUGCU  AACAUGGGAGUAC UGC      A
                    CCU  GUGGAGGCGA  UUGUACCUUCGUG AUG      A
UCAACUUUUACACAGCGAAA^  CU          CU             A   AAAGUA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Ete-Mir-430-P2_5p

mirBase accessionNone
Sequence
0- UGCUUUAACAUGGGAGUACCUGC -23
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Co-mature sequence

Ete-Mir-430-P2_3p

mirBase accessionNone
Sequence
38- UAAGUGCUUCCAUGUUUCAGCGG -61
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