| MirGeneDB ID | Ete-Mir-430-P8 |
|---|
| Family name |
MIR-430 (all species) |
|---|
| Seed |
AAGUGCU |
|---|
| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ete-Mir-430-P1
Ete-Mir-430-P2
Ete-Mir-430-P3
Ete-Mir-430-P4
Ete-Mir-430-P5
|
|---|
| Orthologues |
Cja-Mir-430-P8
Dno-Mir-430-P8
Hsa-Mir-430-P8a
Hsa-Mir-430-P8b
Mml-Mir-430-P8
Pab-Mir-430-P8
Xla-Mir-430-o8a
Xla-Mir-430-o8b
Xtr-Mir-430-o8
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Vertebrata
|
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Genome context
(echTel2) |
JH980399: 668630-668689 [+]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CUCCAGUGGCGAGUGACCUCGGUCCGGAACGCUCAGCCCUGGGGGCACUUUCUUGGUACCUGCAAAGAAAGUGCUGUCAGAGUUGAGGAUCCCUGGCUGCAGGAAGGCGUCUGGCUUCGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUCCAGUGGCGAGUGAC- -| C AACG C G UGGUA
CU CGGUC GG CUCAGC CUGG GGCACUUUCU C
GA GUCGG CC GAGUUG GACU UCGUGAAAGA C
UGCUUCGGUCUGCGGAAG C^ U CUAG A G AACGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The Dicer cut in tenrec is +1 relative to human generating a seed-shifted mature 3p read. Armadillo the only other taxon with reads from this miRNA expresses both versions equally but lowly and thus it is unclear which version predominates in vivo. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Star sequence |
Ete-Mir-430-P8_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GCUCAGCCCUGGGGGCACUUUCU -23
Get sequence
|
|---|
| Mature sequence |
Ete-Mir-430-P8_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAAGUGCUGUCAGAGUUGAGGAU -60
Get sequence
|
|---|
