MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-430-o28

Family name MIR-430 (all species)
Seed AAGUGCG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-526
Paralogues Cpo-Mir-430-P1  Cpo-Mir-430-P2  Cpo-Mir-430-P3  Cpo-Mir-430-P4  Cpo-Mir-430-P5 
Orthologues Hsa-Mir-430-P28  Mml-Mir-430-P28  Pab-Mir-430-P28 
Node of Origin (locus) C. porcellus
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_70: 3095374-3095431 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-430-o28)		 Mir-430-P5 scaffold_70: 3074407-3074465 [-] UCSC
Mir-430-o28 scaffold_70: 3095374-3095431 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAUCAGGAGGAAGCCGGGCUCCGGGGCGCCCCUCGAGCGAGAAGCACUUUCUGUGUAAAUGGAGGGAAGUGCGUCCUCUCUCGAGCGUCGCCCUAAGAGACAGUCGCCGGCACCGGGG
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Structure
        10         20         30        40         50        
CAUCAGGAGGAAGCCGGG-   C-      CCC      C   AA-|        GUGUA 
                   CUC  GGGGCG   CUCGAG GAG   GCACUUUCU     \
                   GAG  UCCCGC   GAGCUC CUC   CGUGAAGGG     A
GGGGCCACGGCCGCUGACA   AA      UGC      U   CUG^        AGGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-430-o28_5p*
mirBase accessionMIMAT0047459
Sequence 
0- CCUCGAGCGAGAAGCACUUUCU -22
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Mature sequence

Cpo-Mir-430-o28_3p
mirBase accessionMIMAT0047460
Sequence 
35- GAAGUGCGUCCUCUCUCGAGCGU -58
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