Mir
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3.0
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24 microRNA genes with node of origin C. porcellus
Sort by genome coordinates
Motifs
MirGeneDB ID
▲
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
UGUG
CNNC
Cpo-Mir-430-o28
cpo-mir-526
MIR-430
AAGUGCG
MIMAT0047459
MIMAT0047460
scaffold_70
3095374
3095431
-
C. porcellus
Vertebrata
No
1
1
Cpo-Mir-506-P2a1
cpo-mir-507a
MIR-506
CUGGCAC
MIMAT0047315
MIMAT0047316
scaffold_84
2762224
2762281
+
C. porcellus
Eutheria
No
Cpo-Mir-506-P2a2
cpo-mir-507b
MIR-506
UUGGCAC
MIMAT0047317
MIMAT0047318
scaffold_84
2763265
2763322
+
C. porcellus
Eutheria
No
1
Cpo-Mir-506-P26a
cpo-mir-12075
MIR-506
AACUCCA
MIMAT0047451
MIMAT0047452
scaffold_84
2702886
2702945
+
C. porcellus
Eutheria
No
1
1
Cpo-Mir-506-P26b
cpo-mir-509d
MIR-506
GAUUGCA
MIMAT0047327
MIMAT0047328
scaffold_84
2715444
2715500
+
C. porcellus
Eutheria
No
1
Cpo-Mir-506-P26c
cpo-mir-509f
MIR-506
UCCCCAA
MIMAT0047333
MIMAT0047334
scaffold_84
2722022
2722078
+
C. porcellus
Eutheria
No
1
1
Cpo-Mir-506-P26d
cpo-mir-509e
MIR-506
GAUUGCA
MIMAT0047329
MIMAT0047330
scaffold_84
2725364
2725420
+
C. porcellus
Eutheria
No
1
Cpo-Mir-506-P26e
cpo-mir-509a
MIR-506
GACUGAA
MIMAT0047321
MIMAT0047322
scaffold_84
2739521
2739577
+
C. porcellus
Eutheria
No
1
1
1
Cpo-Mir-506-P26f
cpo-mir-509b
MIR-506
ACUUCAC
MIMAT0047323
MIMAT0047324
scaffold_84
2748262
2748318
+
C. porcellus
Eutheria
No
1
1
Cpo-Mir-506-P26g
cpo-mir-509c
MIR-506
AGAAACC
MIMAT0047325
MIMAT0047326
scaffold_84
2752734
2752794
+
C. porcellus
Eutheria
No
Cpo-Mir-506-P27a
cpo-mir-892
MIR-506
ACCAAGG
MIMAT0047231
MIMAT0047232
scaffold_84
3931993
3932049
+
C. porcellus
Eutheria
No
1
1
Cpo-Mir-506-P27b
None
MIR-506
ACCAAGA
None
None
scaffold_84
3932651
3932706
+
C. porcellus
Eutheria
No
1
Cpo-Mir-506-P27c
cpo-mir-12077
MIR-506
ACUGAGG
MIMAT0047455
MIMAT0047456
scaffold_84
3933561
3933617
+
C. porcellus
Eutheria
No
1
Cpo-Mir-12072
cpo-mir-12072
MIR-12072
GGGCUGC
MIMAT0047445
MIMAT0047446
scaffold_17
14952640
14952698
-
C. porcellus
C. porcellus
No
1
Cpo-Mir-12073
cpo-mir-12073
MIR-12073
UCAGAGU
MIMAT0047447
MIMAT0047448
scaffold_111
952329
952402
+
C. porcellus
C. porcellus
No
Cpo-Mir-12074
cpo-mir-12074
MIR-12074
CUGAAAU
MIMAT0047449
MIMAT0047450
scaffold_143
1245387
1245446
+
C. porcellus
C. porcellus
No
1
Cpo-Mir-12076
cpo-mir-12076
MIR-12076
CUGGCCC
MIMAT0047453
MIMAT0047454
scaffold_3
1597129
1597188
+
C. porcellus
C. porcellus
No
1
Cpo-Mir-12078
cpo-mir-12078
MIR-12078
GGUGGAA
MIMAT0047457
MIMAT0047458
scaffold_41
4308585
4308650
+
C. porcellus
C. porcellus
No
1
Cpo-Mir-12079
cpo-mir-12079
MIR-12079
CAUGGGA
MIMAT0047461
MIMAT0047462
scaffold_25
8963913
8963973
-
C. porcellus
C. porcellus
No
Cpo-Mir-12080
cpo-mir-12080
MIR-12080
CGCUCUU
MIMAT0047463
MIMAT0047464
scaffold_1
22962766
22962822
+
C. porcellus
C. porcellus
No
1
Cpo-Mir-12081
cpo-mir-12081
MIR-12081
GAGCUAA
MIMAT0047465
MIMAT0047466
scaffold_25
8798446
8798504
-
C. porcellus
C. porcellus
No
Cpo-Mir-12082
cpo-mir-12082
MIR-12082
AGCCAAC
MIMAT0047467
MIMAT0047468
scaffold_7
45795923
45795982
+
C. porcellus
C. porcellus
No
Cpo-Mir-12083
cpo-mir-12083
MIR-12083
UCCAUCU
MIMAT0047469
MIMAT0047470
scaffold_109
302769
302825
-
C. porcellus
C. porcellus
No
Cpo-Mir-12084
cpo-mir-12084
MIR-12084
GCCUGGG
MIMAT0047471
MIMAT0047472
scaffold_65
1244778
1244837
+
C. porcellus
C. porcellus
No
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