MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-12080

Family name MIR-12080 (all species)
Seed CGCUCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12080
Paralogues
Orthologues
Node of Origin (locus) C. porcellus
Node of Origin (family) C. porcellus
Genome context
(cavPor3)
scaffold_1: 22962766-22962822 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCAUCUGCAGUAACCUCUCAGUCACAGCCUCGCUCUUUUCAGGACCUUUGCUGUUCUGAGGAGCAAACGUCCUGAAAAGAGUGAGGCUGUGACUGAGAGGGAUGGGGCCGCUCCAG
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Structure
        10          20        30        40        50        
GCCAUCUGCAGUAACCU--|                            C     UGUUC 
                   CUCAGUCACAGCCUCGCUCUUUUCAGGAC UUUGC     \
                   GAGUCAGUGUCGGAGUGAGAAAAGUCCUG AAACG     U
GACCUCGCCGGGGUAGGGA^                            C     AGGAG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-12080_5p

mirBase accessionMIMAT0047463
Sequence
0- UCGCUCUUUUCAGGACCUUUGC -22
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Co-mature sequence

Cpo-Mir-12080_3p

mirBase accessionMIMAT0047464
Sequence
35- AAACGUCCUGAAAAGAGUGAGG -57
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