MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-12080

Family name MIR-12080 (all species)
Seed CGCUCUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-12080
Paralogues
Orthologues
Node of Origin (locus) C. porcellus
Node of Origin (family) C. porcellus
Genome context
(cavPor3)
scaffold_1: 22962766-22962822 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GCCAUCUGCAGUAACCUCUCAGUCACAGCCUCGCUCUUUUCAGGACCUUUGCUGUUCUGAGGAGCAAACGUCCUGAAAAGAGUGAGGCUGUGACUGAGAGGGAUGGGGCCGCUCCAG
Get precursor sequence
Structure
        10          20        30        40        50        
GCCAUCUGCAGUAACCU--|                            C     UGUUC 
                   CUCAGUCACAGCCUCGCUCUUUUCAGGAC UUUGC     \
                   GAGUCAGUGUCGGAGUGAGAAAAGUCCUG AAACG     U
GACCUCGCCGGGGUAGGGA^                            C     AGGAG 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Cpo-Mir-12080_5p

mirBase accessionMIMAT0047463
Sequence
0- UCGCUCUUUUCAGGACCUUUGC -22
Get sequence
Co-mature sequence

Cpo-Mir-12080_3p

mirBase accessionMIMAT0047464
Sequence
35- AAACGUCCUGAAAAGAGUGAGG -57
Get sequence